<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16869

Description Uncharacterized protein (Fragment)
SequenceMREKLGLSQESGEPIGPGWPHAWRDPAQPDSRGEDEKKTEVNQTENLPHGVGVANLLADAQLERNQAQVRKQRKPIGPDLWPTTRMMKSPTVSGRRKPSSSDRAMEHICSIIARCIVRERMQPAAAQAPPPSGSGQATAPAASRDSPGSMNGSTAENNTQTNFANSLVSAAPAPSFSYGVLANANAASPATNSSSTIPHDISSSKPEALPGPPQSTAAPMPLTSFMGTTPLWPSGPQPFAAPRGMLGPTGPLGPPGLASSAPVSTSSATFPSVASDSSSSVRPNMAGGPVSSTPAVQQQVYSPYPSLPPIAANPQGLWLQPPPQMSGMARPPFMQYPAVFPGPFPFPAHGMPQPIQLPVPRPPVITPLGPTSGVTLSSAPGNQFTGNSNTQAEKNPPPVDHNKHVNDINTKDGETPSHLDAWTAHRTESGTVYYYNALTGESTYERPAGFKGEPDDVALQPTPVSTEKVVGSDWEIVTMNDGRKYYYNNKTKISSWQIPTEVSELGKKQEDSLSRENPVVTANANPEEKGSHFINLSAPALNTGGRDAISLRASTVAAPSSSSALDLVKKKLQESGAPGNSSPVPVSPGTTLSESNGLRSNEATGKVVQSESNKEKPKDANGNGNFSDSSSDSEDADSGPTKEECIRQFKEMLKERGVAPFSKWEKELPKLVVDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKKAAQKAAIEGFKQLLDEASE
Length725
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.06
Grand average of hydropathy-0.681
Instability index56.40
Isoelectric point6.64
Molecular weight77042.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16869
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.89|      35|      40|     283|     322|       1
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  110-  145 (40.31/ 7.89)	SiiarciVRERMQPAAAQ......APPPSGSG...Q..ATAPAASRD
  269-  299 (39.19/10.84)	..........TFPSVASDSSS...SVRPNMAG...GPVSSTPAVQQQ
  302-  339 (49.38/17.98)	S......PYPSLPPIAANPQGlwlQPPPQMSGmarPPFMQYPAV...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.83|      19|      19|     558|     576|       2
---------------------------------------------------------------------------
  558-  576 (25.02/ 6.64)	APSSSSALDLVK.KKLQES.G
  577-  597 (25.81/ 7.11)	APGNSSPVPVSPgTTLSESnG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.45|      38|     113|     225|     262|       3
---------------------------------------------------------------------------
  210-  232 (37.81/11.58)	PGPPQSTAAPMPL..............................tsFMGTTPLW
  233-  262 (57.03/21.42)	PSGPQPFAAPRGMLGPT..........GPLGP.PGLA.SSAP...........
  341-  391 (52.62/19.16)	P.GPFPFPA.HGMPQPIqlpvprppviTPLGPtSGVTlSSAPgnqFTGNSNTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.46|      20|      60|      13|      33|       4
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   13-   33 (38.41/22.64)	EPIGPG.WPHAwRDPAQPDSRG
   74-   94 (37.05/16.56)	KPIGPDlWPTT.RMMKSPTVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.57|      13|      21|     472|     484|       5
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  472-  484 (25.52/16.94)	SDWEIVT.MND.GRK
  494-  508 (16.05/ 7.92)	SSWQIPTeVSElGKK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.28|      14|      15|     599|     612|       6
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  599-  612 (22.30/11.91)	RSNEATGKVVQSES
  616-  629 (24.99/14.20)	KPKDANGNGNFSDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.26|      14|      16|     163|     177|       7
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  163-  177 (20.65/15.59)	FANSlVSAAPAPSFS
  181-  194 (23.61/12.88)	LANA.NAASPATNSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16869 with Med35 domain of Kingdom Viridiplantae
Unable to open file!