<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16869

Description Uncharacterized protein (Fragment)
SequenceMREKLGLSQESGEPIGPGWPHAWRDPAQPDSRGEDEKKTEVNQTENLPHGVGVANLLADAQLERNQAQVRKQRKPIGPDLWPTTRMMKSPTVSGRRKPSSSDRAMEHICSIIARCIVRERMQPAAAQAPPPSGSGQATAPAASRDSPGSMNGSTAENNTQTNFANSLVSAAPAPSFSYGVLANANAASPATNSSSTIPHDISSSKPEALPGPPQSTAAPMPLTSFMGTTPLWPSGPQPFAAPRGMLGPTGPLGPPGLASSAPVSTSSATFPSVASDSSSSVRPNMAGGPVSSTPAVQQQVYSPYPSLPPIAANPQGLWLQPPPQMSGMARPPFMQYPAVFPGPFPFPAHGMPQPIQLPVPRPPVITPLGPTSGVTLSSAPGNQFTGNSNTQAEKNPPPVDHNKHVNDINTKDGETPSHLDAWTAHRTESGTVYYYNALTGESTYERPAGFKGEPDDVALQPTPVSTEKVVGSDWEIVTMNDGRKYYYNNKTKISSWQIPTEVSELGKKQEDSLSRENPVVTANANPEEKGSHFINLSAPALNTGGRDAISLRASTVAAPSSSSALDLVKKKLQESGAPGNSSPVPVSPGTTLSESNGLRSNEATGKVVQSESNKEKPKDANGNGNFSDSSSDSEDADSGPTKEECIRQFKEMLKERGVAPFSKWEKELPKLVVDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKKAAQKAAIEGFKQLLDEASE
Length725
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.06
Grand average of hydropathy-0.681
Instability index56.40
Isoelectric point6.64
Molecular weight77042.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16869
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.89|      35|      40|     283|     322|       1
---------------------------------------------------------------------------
  110-  145 (40.31/ 7.89)	SiiarciVRERMQPAAAQ......APPPSGSG...Q..ATAPAASRD
  269-  299 (39.19/10.84)	..........TFPSVASDSSS...SVRPNMAG...GPVSSTPAVQQQ
  302-  339 (49.38/17.98)	S......PYPSLPPIAANPQGlwlQPPPQMSGmarPPFMQYPAV...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.83|      19|      19|     558|     576|       2
---------------------------------------------------------------------------
  558-  576 (25.02/ 6.64)	APSSSSALDLVK.KKLQES.G
  577-  597 (25.81/ 7.11)	APGNSSPVPVSPgTTLSESnG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.45|      38|     113|     225|     262|       3
---------------------------------------------------------------------------
  210-  232 (37.81/11.58)	PGPPQSTAAPMPL..............................tsFMGTTPLW
  233-  262 (57.03/21.42)	PSGPQPFAAPRGMLGPT..........GPLGP.PGLA.SSAP...........
  341-  391 (52.62/19.16)	P.GPFPFPA.HGMPQPIqlpvprppviTPLGPtSGVTlSSAPgnqFTGNSNTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.46|      20|      60|      13|      33|       4
---------------------------------------------------------------------------
   13-   33 (38.41/22.64)	EPIGPG.WPHAwRDPAQPDSRG
   74-   94 (37.05/16.56)	KPIGPDlWPTT.RMMKSPTVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.57|      13|      21|     472|     484|       5
---------------------------------------------------------------------------
  472-  484 (25.52/16.94)	SDWEIVT.MND.GRK
  494-  508 (16.05/ 7.92)	SSWQIPTeVSElGKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.28|      14|      15|     599|     612|       6
---------------------------------------------------------------------------
  599-  612 (22.30/11.91)	RSNEATGKVVQSES
  616-  629 (24.99/14.20)	KPKDANGNGNFSDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.26|      14|      16|     163|     177|       7
---------------------------------------------------------------------------
  163-  177 (20.65/15.59)	FANSlVSAAPAPSFS
  181-  194 (23.61/12.88)	LANA.NAASPATNSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16869 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASPATNSSSTIPHDISSSKPEALPGPPQSTAAPMPLTSFMGTTPLWPSGPQPFAAPRGMLGPTGPLGPPGLASSAPVSTSSATFPSVASDSSSSVRPNMAGGPVSSTPAVQQQVYSPYPSL
2) ERMQPAAAQAPPPSGSGQATAPAASRDSPGSMNGSTAENNTQTNFANSLV
3) MREKLGLSQESGEPIGPGWPHAWRDPAQPDSRGEDEKKTEVNQTENLPHGVGVANLLADAQLERNQAQVRKQRKPIGPDLWPTTRMMKSPTVSGRRKPSSSDRA
4) PAHGMPQPIQLPVPRPPVITPLGPTSGVTLSSAPGNQFTGNSNTQAEKNPPPVDHNKHVNDINTKDGETPSHLDAWT
5) QIPTEVSELGKKQEDSLSRENPVVTANANPEEKGSHFINLSAPALN
6) SSALDLVKKKLQESGAPGNSSPVPVSPGTTLSESNGLRSNEATGKVVQSESNKEKPKDANGNGNFSDSSSDSEDADSGPTKEECIRQFK
7) TYERPAGFKGEPDDVALQPTPVSTEKVVGSD
187
119
1
347
497
562
443
307
168
104
423
542
650
473










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLVKKKLQ
2) GRKYY
3) IGPDLWPTTR
4) MREKLGLSQESGEPIGPGWPHAWRDPAQ
5) PRFKAIPSYSARRSLFEHYVKTRAEEERKEKKAAQKAAIEGFKQLL
6) RAMEHICSIIARCIVRERMQPAAA
564
482
76
1
675
103
573
486
85
28
720
126