<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16866

Description Uncharacterized protein
SequenceMAPITSVTAQPPASIRSANGSMLNRQPVSVGNGPTATVKVEPATVTSMVATAPSFPQIPRPASQGGAPTLQTSSPPSVVSQDTTASGDGIQDLKPAVSGGMSQQPLRPGGPANSNILNNLSQVRQVVNSATLSVGTSIGLPTMNQTPMAMHMSNMISSSVIQSSVPPAATAQNVYSSQGIPSSISGSFSTTPSNISANSSIGVPQQPTANLQGMGQAVQGIGQGNLTGGSQIVPSGMGMNQNIMNQGLGAANASSGTGAGTGTGTGTMIPTPGMGPPGMQSLGAGNNPNPGSNMQLSQPSSSALQTAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLADNWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLTKLAA
Length400
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.03
Grand average of hydropathy-0.271
Instability index49.06
Isoelectric point10.05
Molecular weight40795.38
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16866
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     176.13|      33|      33|     212|     244|       1
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   87-  117 (30.05/ 7.71)	...GDGIQDL.KPAVSGGmSQqpL.RPGG.PANSNIL
  118-  148 (38.19/11.60)	NNLSQVRQVVNSATLSVG.TS..IgLPT...MNQTPM
  172-  202 (45.97/15.33)	QNV.YSSQGI.PSSISGS.FS..T.TPSNISANSSIG
  212-  244 (61.91/22.95)	QGMGQAVQGIGQGNLTGG.SQ..I.VPSGMGMNQNIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.43|      17|      24|       6|      29|       2
---------------------------------------------------------------------------
    6-   27 (20.03/20.26)	SVTAQPpASIrsanGSMLNRQP
   37-   53 (28.40/ 8.49)	TVKVEP.ATV....TSMVATAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.53|      21|      24|     247|     269|       3
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  257-  280 (34.12/14.57)	TGAGTGTGTGTMIptpGMGPPGMQ
  282-  302 (37.41/ 9.09)	LGAGNNPNPGSNM...QLSQPSSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16866 with Med25 domain of Kingdom Viridiplantae
Unable to open file!