<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16863

Description Uncharacterized protein
SequenceMAPITSVTVNPPASIRSANGSMLNRQPVSVGNVPTATVKVEPAAVTSMVATAPSFPQIPRPASQAGAPTLQTSSPPSVVSQDITASGDGIQDLKPVVSGGMSQQPLRPGGPANSNILNNLSQVRQVVNSAALSVGTSIGLPTMNQTPMAMHMSNMISSSGMQSSVPSAATAQNVYSSQGIPSSISGSFSTTPSNISANSNIGVPQQPTGNLQGMGQAVQGIGQGNLTGGSQLVPSGMGMNQTIMNQGLGAANASSGTGAGTGTGTGTMIPTPGMGLQGMQSLGAGNNPNPGPNMQLSQQPSSALQTAQSKYIKVWEGYRSASASETLADNWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAYRLIGMLFPGVRIFRLIELLFFFDRLLLY
Length425
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.04
Grand average of hydropathy-0.088
Instability index47.41
Isoelectric point9.83
Molecular weight44042.63
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16863
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     179.23|      33|      33|     220|     252|       1
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  133-  165 (42.08/14.03)	SVGTSiGLPTMNQ.TPM.AMHMS.......NMISS.SGMQSSV
  179-  216 (35.35/10.64)	GI.PS.SISGSFSTTPS.NISANsnigvpqQPTGNlQGMG..Q
  220-  252 (60.24/23.17)	GIGQG.NLTGGSQLVPS.GMGMN.......QTIMN.QGLGAAN
  256-  286 (41.56/13.77)	GTGAG.TGTGTGTMIPTpGMGLQ.......GM....QSLGAGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.79|      23|      46|      57|      79|       2
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   57-   79 (39.72/19.57)	QIP.RPASQAGAPTLQT.SSPPSVV
   80-  102 (28.27/11.71)	SQD.ITASGDGIQDLKP.VVSGGMS
  103-  127 (24.80/ 9.33)	QQPlRPGGPANSNILNNlSQVRQVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16863 with Med25 domain of Kingdom Viridiplantae
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