<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16862

Description Uncharacterized protein
SequenceMGGAADETIFVAVGKSVESSKTTLLWALDNFVGKKICLLHVHRPAHSAAFNGKFVIYKPKENGVKVSQQDVEMQKINEIFNHYQSFLAEAGVEADKIWIERDDVGKGIVESISSHNIRWLVMGAAANKYYSKNLSTLKSRKAIFVCQNAPEFSHIWFTCNGRLIYTRELRNDSKANEETNTDLRNNEKLEGETIPSLLSVTSLHSETRQLECSMSEPVPQTFEQAYLPIQRSRSEDLDYSFRSFNPLILPQTIEGRSLIQHSAESGKSKLQGRLRSLKSQGSEDATSTSKLRSVSDQAKSLEISYAKESNERKELEKELKRKKEELEAVQNQHSGIIKHLHAVQEQNSALENQISKSRSVEGELEEKIVSAVELLIAFKERRDRLRIEHGEAMREVRVLRKSVRMESPSFCGPLILSFTFEEIIQATHSFDQSCKIREGRYGTMYKGTLRHADVAIKMLPFSGSRGALDFQDEVEVLSRVRHPNLVTLIGTCPESYSLVYEYMKNGSLEDRLTCRGKKSPPFLWQTRMLIAAEICSTLIFLHSHEPSIIHGNLKPSNILLDSNFVSKISDLGISRLARKEDPHPHLSSVYKDPEYHATGVLTRESDVYSFGVILLRLITGRSISSVVKDVRCALEMGNFNTVLDVSAGDWPLDEVEQLARVSARCCESNKLDRPDLVSEIWTVLELMRDLAITSASKLHLEESRQAPSHFVCPIYQEVMKDPLIAADGHTYEAEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALLYAIQEWRQLL
Length776
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.07
Grand average of hydropathy-0.391
Instability index43.90
Isoelectric point6.39
Molecular weight87735.73
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16862
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.45|      61|     563|     119|     210|       1
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  120-  196 (83.03/144.04)	LV..MGAAANKY.....YSKNlSTLKSRkaiFVC..QNAPEFshIWFTcngRLIYTRELRNdskaneeTNTDLRNNEK..LEGETIPS
  485-  556 (94.42/64.68)	LVtlIGTCPESYslvyeYMKN.GSLEDR...LTCrgKKSPPF..LWQT...RMLIAAEICS.......TLIFLHSHEPsiIHGNLKPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.71|      16|      16|     253|     268|       2
---------------------------------------------------------------------------
  253-  268 (26.94/15.24)	IEGR..SLIQHSAESGKS
  270-  287 (21.77/11.04)	LQGRlrSLKSQGSEDATS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.15|      16|     358|     233|     249|       3
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  215-  231 (24.54/13.91)	SEPVPQTFeQAYLPIQR
  234-  249 (27.61/15.08)	SEDLDYSF.RSFNPLIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.80|      30|     126|     569|     599|       8
---------------------------------------------------------------------------
  569-  599 (51.14/36.96)	SDLGISRlARKEDPH...PHLSSVYKDPEYHATG
  696-  728 (48.66/30.44)	SKLHLEE.SRQAPSHfvcPIYQEVMKDPLIAADG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.86|      26|     178|     455|     480|       9
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  455-  480 (45.87/34.86)	AIKMLPFSG..SRGALDFQ.DEVEVLSRV
  633-  661 (38.99/28.44)	ALEMGNFNTvlDVSAGDWPlDEVEQLARV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.65|      31|      34|     291|     323|      13
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  291-  323 (41.65/34.90)	LRSVSDQAKSL..EISYAKESNerKELEKELKRKK
  326-  358 (45.00/30.67)	LEAVQNQHSGIikHLHAVQEQN..SALENQISKSR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16862 with Med32 domain of Kingdom Viridiplantae
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