<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16858

Description Uncharacterized protein
SequenceMEALDIPYVEEVGLRNASSNVWFRLPFTRGDSWQYICLRLGRPGTMYWDVKINDQHFRDLWELQKGSGSTPWGSGVRIANTSDVDSHIRYDAEGVVLSYQSVEADSVKKLVADIQRLSNARMFALGMRKLLGVKADDKQEDSTNADSKSPVGSKGVETSDKFSEQMRRVFRIEAVGLMSLWFSFGSGSGSGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFINGGEVVSLLDCIRLTAGPLHSLAAATRPARATPVTAGPGVAAALSSMSKQGLLSSNVSSNINQSTATPAGNPMLSSGTAPPPGIQNLQGAAMLAAAGRGGPGIVPSSLLPIDVSVVLRGPYWIRIVYRKNFAVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQELNGIEPSFTGGPQNVVPANSNAPNMGSGQQLSMANGNRVNLSAAAAAISRSGPQVSSLNRVGPAHPGSPNLGAVGPALPIRRSPGAGVPPHVRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHQQQQQQQQQQQNSSAAQDELTQAEIGEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGLVQAQGGEIAPAQKPRIELCLENHAGLTDNAENPSLSKSNIHYDRPRSSVDFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYSFMENASVSFLRMEGSHGGRACWPSNEEWQKCKQRVARTVEGFSSGGDITQGRLRGVADNVQRTLHLCLQGLRDGGGATASSGAT
Length843
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.07
Grand average of hydropathy-0.152
Instability index46.90
Isoelectric point8.73
Molecular weight90540.89
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16858
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.51|      15|      18|     297|     311|       1
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  297-  311 (30.12/12.98)	GNPMLSSGTAPPPGI
  316-  330 (27.39/11.21)	GAAMLAAAGRGGPGI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.07|      18|      22|     517|     537|       2
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  514-  532 (29.07/26.17)	GGGWV....PLVaLKKVLRGILK
  535-  556 (27.01/11.54)	GVLWLfaqlPDL.LKEILGSILK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.08|       9|      18|     242|     252|       3
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  242-  252 (12.41/13.05)	TAGPlhSLAAA
  262-  270 (17.68/ 9.48)	TAGP..GVAAA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.61|      13|     118|      60|      76|       4
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   60-   76 (18.06/17.08)	LWeLQKGSGStpwGSGV
  180-  192 (28.56/11.56)	LW.FSFGSGS...GSGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.51|      11|      23|     431|     443|       5
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  431-  443 (15.89/13.65)	SGQQLSmaNGNRV
  455-  465 (19.62/ 9.45)	SGPQVS..SLNRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.07|      22|     315|     491|     512|       8
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  491-  512 (41.17/23.65)	GVPPHVRGELNTAIIGLGDDGG
  814-  835 (40.90/23.45)	GVADNVQRTLHLCLQGLRDGGG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.35|      36|     315|     335|     379|       9
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  335-  379 (42.96/59.48)	LLPIDVSvVLRGpyWIR.IVYRKNFaVDMRcfaGDQVwlQPATPPK
  653-  689 (58.40/37.31)	LLTLPIS.VLRE..FLKlIAWKKGL.VQAQ...GGEI..APAQKPR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.51|      27|     745|       6|      49|      12
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    6-   33 (48.80/56.32)	IPYVEEVGLR.....NASSNvWFRLPFTRGD..SW
  748-  781 (42.71/15.42)	LPYCVSVRLRysfmeNASVS.FLRMEGSHGGraCW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16858 with Med14 domain of Kingdom Viridiplantae
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