<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16857

Description Uncharacterized protein
SequenceMYERVCEELVHTQNKVQLLSSECLEETRRVNAAMEREETLRKNAAEQKAKHLQALKDVVKGKCLFANEEYKRQIAELNALRESSEKQKIVNALLLGDRRCKRYTKYEIEIATDNFSKAKVIGEGSYGKVYKCNLDHTPVAVKVLRPDANEKKEEFLREVEVLSQLRHPHMVLLLGTCPESGCLIYEYMENGSLEEYIYHQNGGPPLPWSARFHIIFEVACGLAFLHNSKPEPIIHRDLKPGNILLDRNYVSKIGDVGLAKLMSDAVPDSITVYRDSMLAGTIYYMDPEYQHSGTVRPKSDLYAFGMIILQLLVGRHPKGLLLMVEEAVSKGFLGDILDNTVRDWPVPETEELAQIALSCLKLRCRDRPDLESEVLPTLKRLADFANSSQRSGTTNVPSHYFCPILQEVMEDPYIAADGFTYEHRAIKAWLERHKVSPVTKSRLPHSFIIPNHTLRSAIQEWRSRLPF
Length467
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.08
Grand average of hydropathy-0.373
Instability index54.10
Isoelectric point6.77
Molecular weight53349.75
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16857
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.08|      32|      35|     204|     237|       1
---------------------------------------------------------------------------
  204-  237 (56.90/44.73)	PPLPWSARFHI..IFEVacGLA.FLHNSKPEPI.IHRD
  240-  275 (41.18/25.19)	PGNILLDRNYVskIGDV..GLAkLMSDAVPDSItVYRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.32|      34|      37|      11|      47|       3
---------------------------------------------------------------------------
   11-   47 (50.85/39.36)	HTQNKVQLLSSECL...EETRRVNAAMereETLRKNAAEQ
   51-   87 (50.46/31.35)	HLQALKDVVKGKCLfanEEYKRQIAEL...NALRESSEKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16857 with Med32 domain of Kingdom Viridiplantae
Unable to open file!