<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16856

Description Uncharacterized protein
SequenceMQRYHAANCSSAVNNSAIGLTSARESARAESPALPSSFPLNSRLGPPDYHPQTPDCPEETLTREYVQSGYKEMVEGLEEAREILLTQVQTFTKPVVLKCKEAIRKRLRAINESRAKKRKAGQVYGVPLSGTLLSKAAAFPEQRPCTEDFRRRWIEGLSQPHKRLRSLADHVPHGYRRKSLFEILIKNNVPLLRATWFIKVSYLNQIRPGSSGTPDKSQLSRTELWTKDVIDYLQYLLDEFIKNNSHSNPQLRDRSPQVIYSGSTLQKGEPASSTLDGEEPSLHFKWCYVVRLLQWHHAEGLLLPSPIIEWVLNQLQDKEIFEILQLLLPIIYGVIEAVVLSQSYVQILVGVALRYIREPSPGGSYLADNSRRAYTCSAVVEMLRYMMLAVPDTFVSLDCFPLPSCVVSHATNDGGFVAKASEDVGKMEISSAEIACMFKRKRFDALYQSKSFHRLVSCIRKRSDKLAKSICPGNSCSSYAKAVQALDKALVQGDLRVAYKFLFEDFCEGALDEGWIKEVSPCLRSSLKCIETVNLSFIHTVFFLCEWATCDFRNFRTSRFNRMQFTGRRDFSEVYAVIWFLKMKARDLQNDACSGSGDAVGVAGHEERGLDNGNLGPTSGTNGFEIGDSMNHLNRSMSLVDVFDSPGPLHDILVCWIDQHEAHKGETLERLQLLIVELTRFGIFYPQAYVRQLLVSGILDLNFPIVDVDRHIRHCQVLKLLPEALVHDALKEMKIADGAELAEAVHVYSNERQLVLRNRLCNQHRYTGDGKLLGQKLKKHHPRDVPSPASVDHWKSVGSPSEVLSFRKAKSGVHIDELKTAISALMQFPSSDSGLVDTVVDESEGSVKRPAGSMCNKVQLTDGCEECRRVKKQKLTEERSSYIQVHSPTPLEEDDLWWARKGPKLIEPMRIDPPLKTTKQTSRGRQKVVRKTQSLAQLAAARIEGSQGASTSHVCDNRISCPHHRTVMDGEIPKVTDANGPSHYGDIIYIGKALRRLRFAKRRMVTSWLINVVRQLVDEAEKASSVKVGQFNNRSFTALDDLSSLKWKLSEDELSGILYLMDVSNDLVLAIKFLLWLLPKALRIPNSTIHSGRNLLTLQRHMESHVCEVGEAFLLSSLRRYENTLIAADLIPQTLSALMHRAAASVASNGRVSGTSALAYARYLLKKYGAVSSVMEWRKNFKAASDKRLLSELESGRSIDGEHGFSMGAPTGADDLDDLLRQKLSSSRLSRVGMVMREIVQRHIEGAFHFYSTKEKKLLSAGGPKGPIMDKGDEGYQKAQQILMGLMDCIRQTGGAAQEGDPSLICSAVSAIVGSIGPTLAKVPDFSSGSSYANTSLPPAPGSYVAKRILRIHITSLCLLKEALGERQSRVFEVALATEALSALSGAFSPGKVSRNQYQLSPESHDSNLNTSMDSAKGAAGRATKIAAAVSALVIGSVLQGVTSLERMVTVFRLKDGLDVSQFVRSLRSNSNGNTRSPGPVKGDGLLEVYIHWFRLLVGSCRTVSDGLIVELLGEPSALALSRMQQTLPLRLVFPPAYAIFAVLMWRPYILNGNLAAAREDIHQLYVSLNAAMNDALRHFSFRDVCLRNTQGLYDLIAADRTDTELAETLDVKCSDVKSKGIVPLCARHFLNAILDCRIPSVFTQDEPKALSAEIETRLVDKIVHVLNTLQPAKFHWQWLELRLLLNEQALIEKLESSNDSSLKEVMQSLPFGPKKAAASDNESNVIEIILTRLLVRPDASPLYSEAVHLLGRSLEDSLLLMTKWFLEGNDVLFGRKTVRQRLINIAETKGLSISSQSWKHWGWAHSGPDNISSRNDLGKRKYEMTSLEEGEFIEECLESKKHGKGSAGRSLDAEANNICKSHATEKALIELILLCMDQSSDESRYTFASDLIKQLSAIEQQMNAIARGTSKQAGTSPSVTDSPVGKTSSRKGSRGGSPGMAARRQVAADPAPPSPAALRASISLRLHFLLRSLPVICADREPSGKNMRHMLAPVMLHLLGNRLIYEDAELPFCPGQSSPRKRDSSEMLMEAQGVAASLLPGESLFDRMLLILHGLLSSTQPSWLKSKRVSAITHESMRDFCGFEKEVSEKLQNELESMQLPDKIRWRIQAAMPVLVPSVKCSISCQPPSVPQSAIAPLLQPSTFPPASSNPTQRTSQRTQSSSALGKSKASPAVQLENEMEFDSWTLLEDGVGSAPSSGGISAMGSADGANLRASSWLKGAVRVRRTDLTYVGPVDEDS
Length2240
PositionKinase
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.06
Grand average of hydropathy-0.246
Instability index51.63
Isoelectric point8.76
Molecular weight247863.08
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16856
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     423.77|     179|     830|    1193|    1407|       1
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  353-  431 (50.84/14.06)	LRYIREpSPGGSYLADNSRRAYTCSAVVEMLRYMMLAVPDtFVSLDCFplpsCVVSHATNDGGFVAKaseDVGKME..ISS.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1219- 1286 (45.57/63.38)	.........................................................................................................................................aeiacmfkrkrfdalyqsksfhrlvscirkrsdklaksicpgnscssyakavqaldkalvqgdlrvaykflfedfcegaldegwikevspclrsslkcietvnlsfihtvfflcewatcdfrnfrtsrfnrmqftgrrdfsevyaviwflkmkardlqndacsgsgdavgvagheergldngnlgptsgtngfeigdsmnhlnrsmslvdvfdspgplhdilvcwidqheahkgetlerlqlliveltrfgifypqayvrqllvsgildlnfpivdvdrhirhcqvlkllpealvhdalkemkiadgaelaeavhvysnerqlvlrnrlcnqhrytgdgkllgqklkkhhprdvpspasvdhwksvgspsevlsfrkaksgvhidelktaisalmqfpssdsglvdtvvdesegsvkrpagsmcnkvqltdgceecrrvkkqklteerssyiqvhsptpleeddlwwarkgpkliepmridpplkttkqtsrgrqkvvrktqslaqlaaariegsqgastshvcdnriscphhrtvmdgeipkvtdangpshygdiiyigkalrrlrfakrrmvtswlinvvrqlvdeaekassvkvgqfnnrsftalddlsslkwklsedelsgilylmdvsndlvlaikfllwllpkalripnstihsgrnlltlqrhmeshvcevgeafllsslrryentliaadlipqtlsalmhraaasvasngrvsgtsalayaryllkkygavssvmewrknfkaasdkrllselesgrsidgehgfsmgaptgaddlddLLRQKLSSSRLS.....RVGMVMREiVQRHIEGAFHFYSTK.EKKLLSAGGPkgpimDKGDEGYQKAQQILMGL
 1287- 1407 (167.16/94.32)	MDCIRQ.TGGAAQEGDPSLICSAVSAIVGSIGPTLAKVPD.FSSGSSY....ANTSLPPAPGSYVAK...RILRIH..ITSL...CLLKEALGERQSRVfevaLATEALSALSG..AFSPGKVSRNQYQLSPESHDS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1953- 2119 (160.19/90.17)	.........................................................PPSPAALRAS...ISLRLHflLRSLpviCADREPSGKNMRHM....LAPVMLHLLGNrlIYEDAELPFCPGQSSPRKRDS.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................semlmeaqgvaasllpgeslfdrmllILHGLLSSTQPSwlkskRVSAITHE.SMRDFCGFEKEVSEKlQNELESMQLP.....DKIRWRIQAAMPVLVPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.32|      53|     380|     765|     837|       2
---------------------------------------------------------------------------
  777-  837 (77.81/96.98)	LKKHhprdvPSPASVDHW.KSVGSPSEVLSFRKAKSGVHIDElKTAISalMQFPSSDSGLVD
 1165- 1218 (87.51/54.46)	LKKY.....GAVSSVMEWrKNFKAASDKRLLSELESGRSIDG.EHGFS..MGAPTGADDLDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.73|      32|     381|     289|     331|       3
---------------------------------------------------------------------------
  289-  331 (43.34/47.48)	VVRLLQWhhaeGLLLPSPIIEWVLnqlqdkeIFEILQLLLPII
  675-  706 (55.39/32.50)	IVELTRF....GIFYPQAYVRQLL.......VSGILDLNFPIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.68|      34|     829|     622|     657|      11
---------------------------------------------------------------------------
  622-  657 (55.78/47.74)	NGFEIGDSMNHLnRSMSLVDVfDSPGPLH.D.ILVCWI
 1456- 1491 (50.91/32.99)	DGLDVSQFVRSL.RSNSNGNT.RSPGPVKgDgLLEVYI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16856 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIAPLLQPSTFPPASSNPTQRTSQRTQSSSALGKSKASPA
2) NAIARGTSKQAGTSPSVTDSPVGKTSSRKGSRGGSPGMAARRQVAADPAPPS
3) RAESPALPSSFPLNSRLGPPDYHPQTPDCPEETLT
2135
1904
28
2174
1955
62










Molecular Recognition Features






MoRF SequenceStartStop




1) VGPVD
2233
2237