<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16854

Description Uncharacterized protein
SequenceMENNNWRPAPPGGGGPGGGGGAGGEAVPEGDDWRKHLPQESRQRIVNKIMETLKRHLPFSGPEGLHELRKIAVRFEEKIFHAAVNQPDYLRKISLKMLTMETKSQNSVANSMPSGSAGNGSKPPDSVMQPHLGNQGPSMPNQMVGNQPQVRQQLLSQNIQNNMPTSGVQGSAGLTSTLPPVSGTNQTSIPNIVNQNTNMQNMPNVSQNSLGNPTGQGLASNMFVHPRQMSGRQQVVSQQQQQQQPQNQQQYLYQQQLQNHIMKQKLQQGNIQHSMMPSHMQQQQQPQQQQQSQQNMLQPNQIQPAQQSVMQSSTVMQSSGMQAAPLPDVQQNQQPSIQQTSQPMLQQHQQPVMRHQTQPQQAVHQQQTSLQQQQMMPSQQQQPNMQQKQMISQQNNMVDMQQQQHRMLNQQNNLPNLQQQQPQQQQLMSQQNHLSNLHQQQMAPQTNVSGMHQQQPVMGTQTGNSNMQAGQHSVHMLQQPKVSVQQGSSNMMPGQPSQLPPVQQQLMSQMQPQPGQLQQQVGLQQQQSSLQRDMHQRLQASGSVLQPPQNVMDQQKQLYQNQRGHAEASSMPLDSTAQAGQANGGDWQEEIYKKIKYLKDSYGQDLNEMYQKIATKLQQVTVGSMPQNPVSAPQQVNVSAMSSQGGLSMLQSNINNLQANSNVLPQNLKQQQEQQMQQQFKQQYQQRQIQLIQQKQQLMQQQQQQQLSQQAKQQQQQQLPTQLQAHQMSQLHPMNEVNEMKIRPGMGVKPGVFQQHQLVTGQRPAYPHQQLKPGSSFPISSPQLLQAVSPQIPQHSSPQIDQQNLLTSITKTGTPLQSASSPFVVPSPSTPLAPSPMPADSENQKPASGISSLSNAGSLGHQHITAAPAGAQSLAIGTPGISASPLLAECSGPDGAHVVASTAVSGKSTVTEYPIERLIRAVKSASPQALGDAVNDIGSVVSMVDRIAGSAPGNGSRAAIGEDLVAMTKCRMQARNFIMQDGPSGTKKIRRYTSAMPLSVASSAGSMNDSFKQIMGAETSDLESTASSSAKRSRSEANHVLKEEIREINQRLIDTVVDISDEDVDPTAAAAVAEGGDGVVVRCSFNAVSLSPGLKSQYGSAQLSPIQPLRLLVPSNYPNCSPVLLDKFPVEVSKEYEDLSAKAKSRFSISLRRLSQPMSLKDIARTWDNCSRAGAFLRGVHQNVENSSCCEPGGRGVFQLLSFHVRKY
Length1208
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.03
Grand average of hydropathy-0.778
Instability index69.35
Isoelectric point9.39
Molecular weight132561.37
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16854
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     369.75|      38|      38|     365|     402|       1
---------------------------------------------------------------------------
  247-  278 (37.18/ 6.26)	N.QQQ.YLYQQQL...QNHI.........M...KqKLQQGN......IQHSMMPS
  282-  305 (42.52/ 8.52)	Q.QQQP...QQQQQSQQ.NM....................L......QPNQIQPA
  347-  378 (51.21/12.21)	Q.HQQPVMRH.....QTQPQ..........QAVH.QQQTSL......QQQQMMPS
  379-  416 (69.96/20.16)	Q.QQQPNMQQKQMISQQNNM.........VDMQQ.QQHRML......NQQNNLPN
  418-  444 (45.62/ 9.84)	Q.QQQP..QQQQLMSQQN..................HLSNL......HQQQMAP.
  516-  553 (39.44/ 7.22)	QlQQQVGLQQQQS.SLQRDM.........HQRLQ.ASGSVL......QPPQNVMD
  680-  721 (46.30/10.13)	F.KQQYQQRQIQLI.QQKQQ.........L.MQQ.QQQQQLsqqakqQQQQQLPT
  722-  768 (37.53/ 6.41)	Q.LQAHQMSQLHPMNEVNEMkirpgmgvkPGVFQ.QHQLVT......GQRPAYPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.23|      13|      16|    1168|    1182|       5
---------------------------------------------------------------------------
 1168- 1182 (21.44/21.79)	DN..CSRAGAflRGVHQ
 1185- 1199 (23.79/15.56)	ENssCCEPGG..RGVFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.47|      11|      15|     585|     595|       6
---------------------------------------------------------------------------
  585-  595 (21.67/14.39)	GDWQEEIYKKI
  603-  613 (20.80/13.52)	GQDLNEMYQKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     146.53|      34|      41|     139|     173|       9
---------------------------------------------------------------------------
  110-  160 (39.49/11.88)	NSMPSgSagngskppdsvmqphlGNQ...G..psMPNQMVGNQPQV...RQQLLSQNI.Q
  161-  199 (42.68/16.94)	NNMPT.S................GVQgSAGltstLPPVSGTNQTSI....PNIVNQNTnM
  316-  345 (31.78/ 7.99)	..MQS.S................GMQ.AAP....LPDVQQNQQPSIqqtSQPML......
  490-  509 (32.59/ 8.40)	NMMP.........................G....QP....SQLPPV...QQQLMSQ....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.69|      16|      16|    1104|    1119|      10
---------------------------------------------------------------------------
 1104- 1119 (28.93/16.51)	SPI..QPLRLLVPSNYPN
 1121- 1138 (22.76/11.48)	SPVllDKFPVEVSKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.47|      15|      15|     814|     828|      11
---------------------------------------------------------------------------
  814-  828 (26.33/11.38)	TPLQSASSPFVVPSP
  830-  844 (26.13/11.24)	TPLAPSPMPADSENQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.28|      10|      16|     859|     868|      12
---------------------------------------------------------------------------
  859-  868 (17.74/ 6.86)	LGHQHITAAP
  876-  885 (16.55/ 6.01)	IGTPGISASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      53.83|      15|      15|     919|     933|      15
---------------------------------------------------------------------------
  919-  932 (17.70/ 8.38)	.IRAVKSASPQALGD
  988- 1002 (20.55/11.15)	KIRRYTSAMPLSVAS
 1003- 1016 (15.59/ 6.32)	SAGSMNDSFKQIMG.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16854 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQIMGAETSDLESTASSSAKRSRSEANHVL
2) LQSASSPFVVPSPSTPLAPSPMPADSENQKPASGISSLSNAGSLGHQHIT
3) MENNNWRPAPPGGGGPGGGGGAGGEAVPEGDDWRKHLPQESRQRIVNKIMETLKRHLPFSGPEGLHEL
4) MKQKLQQGNIQHSMMPSHMQQQQQPQQQQQSQQNMLQPNQIQPAQQSVMQSSTVMQSSGMQAAPLPDVQQNQQPSIQQTSQPMLQQHQQPVMRHQTQPQQAVHQQQTSLQQQQMMPSQQQQPNMQQKQMISQQNNMVDMQQQQHRMLNQQNNLPNLQQQQPQQQQLMSQQNHLSNLHQQQMAPQTNVSGMHQQQPVMGTQTGNSNMQAGQHSVHMLQQPKVSVQQGSSNMMPGQPSQLPPVQQQLMSQMQPQPGQLQQQVGLQQQQSSLQRDMHQRLQASGSVLQPPQNVMDQQKQLYQNQRGHAEASSMPLDSTAQAGQANGG
5) QQQQQLSQQAKQQQQQQLPTQLQAHQMSQLHPMNEVNEMKIRPGMGVKPGVFQQHQLVTGQRPAYPHQQLKPGSSFPISSPQLLQAVSPQIPQHSSPQIDQQNLLTSITKTG
6) RKISLKMLTMETKSQNSVANSMPSGSAGNGSKPPDSVMQPHLGNQGPSMPNQMVGNQPQVRQQLLSQNIQNNMPTSGVQGSAGLTSTLPPVSGTNQTSIPNIVNQNTNMQNMPNVSQNSLGNPTGQGLASNMFVHPRQMSGRQQVVSQQQQQQQPQNQQQYLYQQQLQN
1012
816
1
262
702
91
1041
865
68
585
813
259










Molecular Recognition Features






MoRF SequenceStartStop




1) NWRPAPPG
5
12