<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16850

Description Uncharacterized protein
SequenceMASSRAEGKAIGIDLGTTYSCVGVWQHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRRFSDPTVQSDMLHWPFRVIPGPGDKPMIVVTYKGEEKQFAPEEISSMVLTKMKEVGESFLGQTIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKQKKDISGNPRALRRLRTACERAKRTLSSTSQTTIEIDSLYEGVDFYATITRARFEELNMDLFLKCMEPVEKCLRDAKLDKGQVNDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGDEKVQDLLLLDVTPLSLGLETAGGIMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVTFDIDANGILNVTAEDRTAGLKNQITITNDKGRLSKDDIERMVQEAERYKAEDEEVKKKVEAKNSLENYAYNMRNTVRDEKFAGKLDPADKEKIEKAVDETIDWLDRNQLAEVEELEDKLKELEGLCNPIIAKMYQGAGTGEGPMGGGTEMPHGGSGSDGTGAGPKIEEVD
Length654
PositionUnknown
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.06
Grand average of hydropathy-0.448
Instability index30.41
Isoelectric point5.08
Molecular weight71863.44
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16850
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.92|      12|      18|     119|     130|       1
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  119-  130 (20.29/15.19)	FAPEEISSMVLT
  139-  150 (19.63/14.44)	FLGQTIKNAVVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.69|      41|      41|     305|     345|       2
---------------------------------------------------------------------------
  305-  336 (48.53/28.80)	...........TR.ARF..EELNMDLF.....LKCMEPVEKCLRDAKLDKG
  337-  379 (44.56/25.90)	QVNDVVLVGgsTRiPKV..QQLLQDFFngkelCKSINP......DEAVAYG
  381-  413 (35.60/19.37)	AVQAAILTG........egDEKVQDLL.....LLDVTPLSLGLETA.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     254.05|      86|     259|     179|     279|       3
---------------------------------------------------------------------------
  179-  279 (129.08/108.05)	NEPTAAAIAYGLDKkaSRTGEKNVL.IFDLGGG............TFDVsiltieegifevKAtAGDTHLGGEDFDNRLVNH..FVQEFKRKQKKDISGNPRALRRLRTACERAKR
  441-  541 (124.97/76.31)	NQPGVLIQVYEGER..ARTKDNNLLgTFELKGIppaprgvpqinvTFDI............DA.NGILNVTAEDRTAGLKNQitITNDKGRLSKDDIERMVQEAERYKAEDEEVKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.51|      18|      21|      39|      56|       4
---------------------------------------------------------------------------
   17-   34 (20.18/10.01)	....TTYSCVGVWQHDRveIIP
   39-   56 (32.68/20.30)	NR..TTPSYVAFTDTER..LIG
   61-   79 (24.65/13.69)	NQvaMNPRNTVF.DAKR..LIG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16850 with Med37 domain of Kingdom Viridiplantae
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