<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16848

Description Uncharacterized protein
SequenceMQLSQAYELHITELGHAYVLFFFSTVVGLIDSTVDDWEYQNTTKDRPSGIPGSMDLQKMDVDLKGTQNDKRVERRDWMRRTNSLMALEVLEKISESKKGATLLRVIHLNMPEKFDGLLKRLCFHETCKMTSPNLIAAKQIFIKLSTNIQRSLAFEGQLSQRTVTEMLVDIESCNFVPCWNSKSALPACWVLFDIYMESTMDPKQLPITSAVDILTETVITLQVLNQASWQETFLALWVSGLRLVQRERDPPEGPIPHLEARLCVLLSIVPLAIANILKDDVIVNSSPPQDAKPLTEMELKYGHGVNGKIRTPKRDDLILALQSLGQFSSLLCPPESVLDAANRAAAKAADVISLSKNTNDSKGSDCPSGSSVKAGGNMRHLIVEACIARNLIDASAYFWPDYVSASVISLSDATPKEMSPWSVFMEGAPLTESLISSLIATPATSLAEIKKVSRIALNGSEEEKSAAAKILCGASLSCGWNIQEHVVNFVVKLLSPPLLPGHDESQNYLMDHMPMLSAVLFGVSPIETVHILSLHGAVPEFAAALMPLCEVFGSLNPALNNQSKTGDQLSVYRVFSAAFLVLLRLWKFYRPAIERGLKEGDGAIGVGLTLEYLLLLRNRRFPSATVNPSPQDKMPMDLDQFDSPSDKPIYIDFFPKLRAWYCQNKICVASPLSGLCTGNSVHQVANRIISTVYSKMTMGGPSSDNSAASSGTSCGSSSTGGEEPSERPLLPAWELLEAIPFALESLLTACAYGKLSSRHLTTDGSTSMLPLPMAALVSLTITFKLDRNIEYLLAVAGPALENCATGCSWPSMPTISSLWAQKIQRWHKYIVYSCSRSVFRQSKGAVTQLLRSCFTSFLGIRNGPDSPLTSQGSINGLLGHISPQGGLPNSAPGLLFLRSCRLIQDVEQVNDVIVGLVAEFARDSVDLSAKTTSTRLRSAHSSLSITAARAKEVSSLGASLLCAAGGPRLVYELYWRTIPTWLLSAEEVKLKEVSSASRIIEGYAMAYLMLQCGACTWGIKDRPLSWGFSSQATRVVAAHMDFLAGVLEGNVLLGCHPVTWKTYVSCLLGFIVNFNPVWVREVRKETLRKLACGLRKWHKSELALSLLERAGIQAMDLVAESLSSIG
Length1126
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.07
Grand average of hydropathy0.061
Instability index49.84
Isoelectric point6.85
Molecular weight123102.85
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16848
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.52|      34|      53|     325|     358|       1
---------------------------------------------------------------------------
  325-  358 (57.23/30.44)	GQFSSLL...CPPESVLDAANRAAAK..AADVISLSKNT
  376-  414 (51.29/26.63)	GNMRHLIveaCIARNLIDASAYFWPDyvSASVISLSDAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.96|      15|      40|     943|     959|       2
---------------------------------------------------------------------------
  943-  959 (19.67/18.53)	LSITAARAKEVSSlgAS
  983-  997 (24.29/14.89)	LSAEEVKLKEVSS..AS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.13|      34|     574|      38|      72|       3
---------------------------------------------------------------------------
   38-   72 (57.17/38.92)	EYQNTTKDR..PSG..iPGSMDLQKMDVDLKGTQNDKRV
  611-  649 (52.96/31.42)	EYLLLLRNRrfPSAtvnPSPQDKMPMDLDQFDSPSDKPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     306.21|      78|     162|     656|     739|       4
---------------------------------------------------------------------------
  419-  503 (74.57/39.17)	........SP.WSVFMEGAPLTEsLISSLIATpatslaeikkV.SRIALNGSEEEKSAAAK.ILC...GASLSCGWNIQEHvvnfvvkllspPLLPGHD.....
  505-  578 (97.49/51.45)	SQNYLMDHMPmLSAVLFGVS........PIET..........VH.ILSLHGAVPEFAAALMPL.CevfGSLNPALNNQSKT..........gDQLSVYRVFSAA
  662-  739 (134.15/87.75)	CQNKICVASP.LSGLCTGNSVHQ.VANRIIST..........VYSKMTMGGPSSDNSAASSGTSC...GSSSTGGEEPSER...........PLLPAWELLEAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.78|      21|     163|     792|     819|       5
---------------------------------------------------------------------------
  792-  819 (32.07/37.18)	LLAVAGPALencATGCSWPSMPTisslW
  961-  981 (43.72/27.23)	LCAAGGPRL...VYELYWRTIPT....W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.69|      27|      47|     179|     207|       6
---------------------------------------------------------------------------
  179-  207 (47.39/41.69)	WnsKSALPACWVLFDIYMESTMDPKQLPI
  229-  255 (50.29/36.74)	W..QETFLALWVSGLRLVQRERDPPEGPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.63|      12|      33|    1013|    1026|       8
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 1013- 1026 (21.53/16.74)	GACTWGIkdRPLSW
 1049- 1060 (25.10/12.92)	GNVLLGC..HPVTW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16848 with Med33 domain of Kingdom Viridiplantae
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