<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16846

Description Uncharacterized protein
SequenceMEAANAKREAFEELLRRQKAEKNAIEVSRRAKVLEKLYCDELRQRKELQEALAKEKESFETFKNQQTEERSASSNCRTILEGQIATTNHTTQELQDKIAFTEELLEVCKKEQEELQVCLENALKVNEELLTSQGGEASTSQRQQGLLEFSFSEIQEATNNFDPSSKLEEAEYGSIYRGVLRHTPVTIKMLHPDSYLGPSQYHPEHLPNGSLEDRLRSENNFAPLSWQNRLRISTEICSALIFLHSCNPDRIVHGDLKPKNILLDANLVSKLKDLRIQDQNPSRTSSENGNNSSGEFSVESDVYSLGIILLQLLTGRSAPDLAAELHDVLYALYDGNINDMLDETAGDWPFLETTQLARLALSCCEMDRNNQPDLIAEVWTVLESIRACCEVPTTSPSQSDPNETTETPSYLICPIYQEIMEDPHVAADGFTYEASAIRGWLNGGHDTSPMTNLQLPNGRLIPNRTLRTAIQEWLQNHQ
Length478
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.06
Grand average of hydropathy-0.599
Instability index50.87
Isoelectric point4.81
Molecular weight54010.65
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16846
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.60|      22|      24|     363|     384|       1
---------------------------------------------------------------------------
  319-  340 (35.48/26.43)	PDLAAELHDVLYA.........LYDGNIN..DM
  341-  371 (33.68/24.68)	LDETAGDWPFLETtqlarlalsCCEMDRN..NQ
  372-  398 (30.44/21.54)	PDLIAEVWTVLES......iraCCEVPTTspSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.99|      29|      30|     144|     172|       2
---------------------------------------------------------------------------
  144-  172 (48.01/26.73)	QGLLEFSFSEIQEATNNFDPSSKLEEAEY
  177-  201 (42.56/22.99)	RGVLRHTPVTIK....MLHPDSYLGPSQY
  204-  225 (28.42/13.28)	EHLPNGSLEDRLRSENNFAPLS.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.01|      43|      45|       9|      53|       3
---------------------------------------------------------------------------
    9-   53 (63.46/48.12)	EAFEELLRRQKAEKNAIEVSRraKVLEKLYCDELRQRKELQEALA
   57-   99 (71.56/48.06)	ESFETFKNQQTEERSASSNCR..TILEGQIATTNHTTQELQDKIA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16846 with Med32 domain of Kingdom Viridiplantae
Unable to open file!