<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16838

Description Uncharacterized protein
SequenceMVAFVYSTMNPSSRYLGVNAADITDESDGIKIISKKLQNRKVLVVLDDVYDPEQIGKLAGEAGWFREGSRIIITSRNKNAPVFEGGRVEIFEAEPMKFEESLLLFSRHAFGKENPAEDFHGLSEKAVRITGGLPLALEVVGSKLRTSDRGHWNHIIGTLQKIPEKKVEDRLKIGYDALRLEVKEIFLDIACFFINEKKTKAMYMWQACDFEPELAVQELVNACLVKLTNENRFWMHDQLRDLGRKLIRDERLKHHGKPCSRIWMHEDALKVLQDEEGTNLHLKNLVVLDLSESSVSETWAGWRHIGMCKELKVLDLRRCDHLTETPDLSMCTKLERLILKGCINLAQIDHSVGKLKCLKYLNASGCIHIREIPREVCCLDGLVDIVMIMEQSFNCSYKLPDSIERLERLQRLCVSLGRSRPPSSLGDLKSLTMLVLSRSEIAELPESIGGLVKLEFLSLFYCKDLKKLPNSIGSLKSLVELNISMSGIVELPDEVVNLQKLKVIDMRGCDIRRLPDFLGNLEKLERLDVFSCNFSEAVPSAIKGITSSLKVSSSAWDKSCYRYWKREWLVQSMQIPTFFHRWQGYGQNNRHCSWSRNGSNNAIAYSSSLGSSGSSSCQQAKQQQQQLPTQLQAHQMSQLHPMNEMKIRPGMGVKPGVFQQHHSVTGQRPAYPCQQLKLGSSFPIFSPQLLQAVSPQIPQHSSPQIDQQDLLTSVTKTGTPLQSASSPFACNLVEANHVLKEEIREINQQLIDIIVDISDEDVDPTAAAAVAEGGEGVVSPIQPLRLLVPSNYLNCSPVLLDKFPVEVSKEYEDLSAKAKSRFSISLRRLSQLMSLKDIARTWDNCSRAVILEYAEQSGGGSFSSNHRGLRNSQPHRRCWCTLPKSSELPRRSAFTPITRSWATSSGGRLEVVLCTFLLCRPQTTLKPKIVFFIGNGFRGPLFHELILRNPNTYTLRRNIEFCLSEGVTPDGVSKFMVNQPRAAVQTPERMVSAVELVKRMGIEPKSGMFIHALLRIMLSMNEANWNHKVEVLKSLRLRQRQRVLEILLSKGLLQVEKSNGWIYTLPEKCFLRKDIVKNLNEIPDLMEIYRGSSDKEKGTRKKKRESKIA
Length1109
PositionTail
OrganismPunica granatum (Pomegranate)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Lythraceae> Punica.
Aromaticity0.07
Grand average of hydropathy-0.286
Instability index50.93
Isoelectric point8.92
Molecular weight125390.62
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ADP binding	GO:0043531	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16838
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     201.26|      20|      21|     491|     510|       1
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  325-  344 (23.43/10.60)	T.....PD.LSMCTKLERLI..LK.....GCiN
  372-  396 (19.31/ 7.41)	I.....PREVCCLDGLVDIV..MImeqsfNC.S
  399-  415 (24.16/11.17)	L.....PDSIERLERLQRLC..V.........S
  416-  440 (20.81/ 8.57)	LgrsrpPSSLGDLKSLTMLV..LS.....RS.E
  444-  463 (29.98/15.68)	L.....PESIGGLVKLEFLS..LF.....YC.K
  468-  487 (18.01/ 6.41)	L.....PNSIGSLKSLVELNisMS.....G...
  491-  510 (32.55/17.66)	L.....PDEVVNLQKLKVID..MR.....GC.D
  514-  533 (33.01/18.02)	L.....PDFLGNLEKLERLD..VF.....SC.N
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.46|      17|      28|     232|     253|       2
---------------------------------------------------------------------------
  232-  253 (28.66/27.60)	RFWMH.DQLrdlgrKLIRDE.....RLK
  261-  283 (23.80/11.65)	RIWMHeDAL.....KVLQDEegtnlHLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.55|      39|      40|     622|     660|       3
---------------------------------------------------------------------------
  571-  619 (44.13/25.78)	.QSMQIPTffhRWQGYGQNNRHcswsrngSNNAIAY.SSSL..GSSgSSSCQQ
  622-  660 (69.62/45.26)	QQQQQLPT...QLQAHQMSQLH.......PMNEMKI.RPGM..GVK.PGVFQQ
  663-  700 (50.80/30.88)	SVTGQRP.......AYPCQQLK.......LGSSFPIfSPQLlqAVS.PQIPQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.05|      32|     726|     286|     324|       4
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  286-  324 (51.04/43.13)	VVLDLSEssvsetwAGWRHIGMCKELKVLDLRRCDHLTE
  352-  371 (25.85/ 9.23)	...................VGKLKCLKYLNASGCIHIRE
 1016- 1045 (50.16/28.27)	IMLSMNE.......ANWNH..KVEVLKSLRLRQRQRVLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.98|      21|      28|     916|     936|       8
---------------------------------------------------------------------------
  916-  936 (39.46/25.42)	FLLCRPQT.TLKPKIVFFIGNG
  945-  966 (33.52/20.50)	LILRNPNTyTLRRNIEFCLSEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.90|      28|      39|     810|     842|       9
---------------------------------------------------------------------------
  810-  842 (37.28/32.94)	EYEDlsAKAKSRFSISLRRLSQLMSLKdiaRTW
  852-  879 (53.63/31.53)	EYAE..QSGGGSFSSNHRGLRNSQPHR...RCW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16838 with Med15 domain of Kingdom Viridiplantae
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