<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16834

Description Putative mediator of RNA polymerase II transcription subunit 26b
SequenceMYLMPDCLSSNVEIDCARLQSDALLFESLRRLQLMQLSVEALKATEIGRAVNGLRKHNSKQIRHLVRTLIEDWKVMVDEWVNATAAITDHSHGSVNPSVVDEEEGLPSPPLDEGAFLATQTTSIRLSEFFDGMDDDGNFRISGDIDKSRDNRRLAPESHRPVRRQEPLNYAAISEEKAPMKLQEAVLRQTKPPVVSSEQPKAQGVVNKLSKLPSSDFGPGRPSKLAPEQKLSTEVSGVHRKSSNTPQDVKSKNMEEASVRAKLEIAKRKLQEGYQLAENAKKQRTIQVMELHDLPKQPHAYRPTSGMKPKNQFKNWANQRR
Length321
PositionUnknown
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.04
Grand average of hydropathy-0.756
Instability index57.17
Isoelectric point9.18
Molecular weight36145.61
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16834
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.96|      47|     103|      99|     150|       1
---------------------------------------------------------------------------
   99-  150 (67.59/61.14)	VVDEEEGLPSPPLDEG..AFLATQTtsiRLSEFFDGMDDDGNfRISGDIdKSRD
  205-  253 (74.37/48.73)	VVNKLSKLPSSDFGPGrpSKLAPEQ...KLSTEVSGVHRKSS.NTPQDV.KSKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16834 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FRISGDIDKSRDNRRLAPESHRPVRRQEPLNYAAISEEK
2) PMKLQEAVLRQTKPPVVSSEQPKAQGVVNKLSKLPSSDFGPGRPSKLAPEQKLSTEVSGVHRKSSNTPQDVKSKNMEEASVRAKLEI
3) RKLQEGYQLAENAKKQRTIQVMELHDLPKQPHAYRPTSGMKPKNQFKNWANQRR
139
179
268
177
265
321










Molecular Recognition Features






MoRF SequenceStartStop




1) AYRPT
2) IRLSEFF
3) KNQFKNWANQRR
300
124
310
304
130
321