<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16833

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMMQQIQPGPVAATPAASTNHPDSGAPAVEAPPKQVATAMERLSRAARLIADIRIGADRLLEALFLAAESPHQSNKIIQFLVKEESVMRQYFQDLRVLGKQLEDSGVLNGSLKSRGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEAFCIDRGLVTAKKFRGSQGLVTGHRDLLNKEGSVSDIITNLQLMAPDVRIFTYQRLDWLKRASALSTDHPGSSSNEHTYQNSNNLRSGLGNTVVLAADQIAVIELLVPSVFRAVVSLHPAGSMSPEAVAFFSTDEGGNYVHSRGLSVFHVFKHITGHADKALQYFQSVDMDISLSLLLRWICSYRTLFTDACSKCQRLLMMDKSLALVLPPVHRTYQITSATKTSPNQLPSSDKSQSCDFIFAYHIGCAADDT
Length426
PositionTail
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.07
Grand average of hydropathy-0.133
Instability index41.56
Isoelectric point8.60
Molecular weight46722.81
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16833
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.37|      68|     219|      15|      84|       1
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   15-   84 (106.33/81.09)	AASTNHPdsGAPAVEAPPKQVATAMERLSRAARLIADIRIGADRLLEALFLAAESPH....QSNKIIQFLVKEE
  237-  308 (107.04/75.11)	ALSTDHP..GSSSNEHTYQNSNNLRSGLGNTVVLAADQIAVIELLVPSVFRAVVSLHpagsMSPEAVAFFSTDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.75|      42|     132|     179|     229|       2
---------------------------------------------------------------------------
  179-  229 (59.16/72.41)	RGLVTAKKFRGsqglVTGHRD.LLNKEGSV.SDIitNLQLMapdVR.IFTYQRL
  316-  360 (63.60/48.04)	RGLSVFHVFKH....ITGHADkALQYFQSVdMDI..SLSLL...LRwICSYRTL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16833 with Med27 domain of Kingdom Viridiplantae
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