<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16829

Description Cyclin-dependent kinase E-1
SequenceMGDGRGIAAASGGGGGANNRPAWLQQYDLVGKIGEGTYGLVFLAKTKLLKSCIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHREKLNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGDEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGGKHYTSAVDMWAVGCIFAELLTLKPLFQGVEVKGTPNPFQVDQLDKIFKVLGHPTPEKWPTLVNLPHWHNDQQHIQGHKYDNPCLHSYVHLPPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRIDPLPGRNALVPTQPVEKIVNYPARPVDTSTDFEGTTSIQPPQSVSSGNVVAGSVAASQVVPSRGVPRPIPLVGMQRVPPASMAAFNIASQGGIGALNPGGLPLQRGAAAQAHSQQLRRKDPGMGMQNTGYPQQKRRF
Length473
PositionKinase
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.08
Grand average of hydropathy-0.288
Instability index39.65
Isoelectric point9.21
Molecular weight52215.32
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IEA:UniProtKB-EC
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IEA:UniProtKB-EC

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16829
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.90|      30|      42|     288|     329|       2
---------------------------------------------------------------------------
  288-  323 (42.90/52.99)	HKY..DNPcLHSYVHLPPKSPaydlLSKMLEYdPRKRI
  331-  362 (50.99/26.28)	HEYfrIDP.LPGRNALVPTQP....VEKIVNY.PARPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.94|      34|      42|     162|     198|       3
---------------------------------------------------------------------------
  162-  198 (49.30/51.85)	LVMGEGDEQGVVKIADFGLarIYQA..PLKPLSEnGVVV
  207-  242 (56.64/45.09)	LLLGGKHYTSAVDMWAVGC..IFAEllTLKPLFQ.GVEV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16829 with CDK8 domain of Kingdom Viridiplantae
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