<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16822

Description Pre-mRNA-processing protein 40C
SequenceMSSPVDVPPPSSQSPTSEAPVGVPAQGCPTSTSSCMLTSSAVGPNSNAAAPVVAPSNQDFSPTTAVTVSSTPFTALPAPRASQGTASDLLQDPVRAKFVTSPGYVVPTPFPHTVFPRVNSASGIPQQTPSAPVLKLTPPMSPAALQPPVPGQSLVNRPSFSYNIASQLNAGSASGQQFQPTIATSQRHLQIGNPVPPLLAAVCLQPPVPRQPLRSIAPISGTVPQNFLPPVPAPLPKGQQSTSMNFSFGGSPKIITSDLSNKNLPSSTCATNAVASDAGTTLGASTNSDTKLSNNMPTTSSAPSATSIPSSSSMLLPAGLLITGRPVGNCASINLPAVHSLSVVHSAPLDSSPGTMRPPVPNQPSAPANPSSIPNTTLHNVPQQIYPPSSSVSNIPPPSQPQWLHPPPLQYPGALPGPFPFPVRGPTPPAIPFSNVKPPGVLPQVATEVLPSSTSESSISVRNGGAGSPPPDASIEKETSDIQQDEGNRKSELEAWTVHKTESGVTYYYNSLTGISTYERPSNFNGVPEMNTVQIIPVSWEKLPGTNWTLVTTNDGKKYYYDSISKVSSWQVPAEVLEMRKNQELNSAKEENASIFADKGNTPTPGPISTPAAQTGGRDSLATRTSSGQVSASALDLIKKKLQDSGTPIVSAPLQAIAIPFASDLNGTRVVDASVKGELVVNSKDKMKDDHVDGDMSDSSSDSDDAETMPTKDECLIQFKEMLRERGVAPFSKWEKELPKIVFDPRFKAVPSYSTRRAIFEQYVRTRAEEERKEKKAAQRAAIDGFKKMLEEASEYIDYRTDFQTFKRKWSGDPRFEALDRKERELLFNEKVVALKKAVEGKIQAERAASVTSFKSMLKERQDITTSSRWSKVKDTLRNDPRYKSVNHGEREALFNEYIAELKSEEDEAERSAKAKMVEQNKLKEREREMRKRKEREEHEMERMRLKVRRKEAVTSFQALLVETIKDPKASWTESKLRLEKDPQGRASNPDLSQADAEKLFRDHVKDLYERCVRDFRALLGDVITADAAARITEEGKNVLNSWSEAKRLLKPDPRYSKMPRKDRDALWQRYTQDLLRKQQKDQKDKPDIDRKNTDSPNKSPRRSHGRK
Length1108
PositionUnknown
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.06
Grand average of hydropathy-0.641
Instability index53.11
Isoelectric point9.12
Molecular weight120802.58
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16822
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     423.96|      66|      67|     771|     836|       1
---------------------------------------------------------------------------
  719-  767 (50.43/27.68)	.................FKEMLRERgvAPFSKWEKELP....KIV.......FDPRFKA....VPSySTRRAIF.EQYVRTR
  771-  836 (105.92/66.99)	ERKEKKAAQRAAI..DGFKKMLEEA..SEYIDYRTDFQTFKRKWS.......GDPRFEA....LDR.KERELLFNEKVVALK
  840-  903 (83.58/51.17)	EGK.IQAERAASV..TSFKSMLKE...RQ......DITTSSR.WSkvkdtlrNDPRYKS....VNH.GEREALFNEYIAELK
  906-  937 (35.01/16.75)	EDEAERSAKA.........KMVEQN..K..LKER.EREMRK........................R.KERE...........
  942- 1009 (81.46/49.67)	ERMRLKVRRKEAV..TSFQALLVET..IK..DPKASWTESKLRLE.......KDPQGRAsnpdLSQ.ADAEKLFRDHVKDLY
 1012- 1068 (67.56/39.82)	CVRDFRALLGDVItaDAAARITEEG..KNVLN...SWSEAKRLLK.......PDPRYSK....MPR.KDRDALW........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     190.23|      37|      37|     331|     367|       2
---------------------------------------------------------------------------
   25-   62 (35.09/ 7.88)	AQ..GCPTSTSSCMLTSSAVGPNSNAAAPVVaP..sNQDFSP
  180-  212 (38.52/ 9.27)	PTI.ATSQRH.LQIGNPVPPLLAAVCLQPPV.P...RQP...
  331-  367 (65.11/20.06)	ASI.NLPAVHSLSVVHSAPLDSSPGTMRPPV.P...NQPSAP
  390-  429 (51.51/14.54)	SSVsNIPPPSQPQWLHPPPLQ.YPGALPGPF.PfpvRGPTPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     167.05|      39|      79|     134|     172|       3
---------------------------------------------------------------------------
   91-  145 (47.92/19.43)	QDP...VR.....AK.FVTSPGyvvptpFPHTVFPRVNSAS.............................gipqqtpsapvLKLTPPMS....PA..AL
  146-  227 (38.71/14.29)	QPP...VP.....GQSLVNRPS......FSYNIASQLNAGSasgqqfqptiatsqrhlqignpvppllaavclqppvprqpLRSIAPI.sgtvPQ..NF
  228-  274 (34.89/12.17)	LPP...VPaplpkGQQ.STSMN......FSFG.......GS...............................pkiitsdlsNKNLPSST....CAtnAV
  275-  320 (45.53/18.10)	ASDagtTL.....GASTNSDTK......LSNNMPTTSSAPS........................................ATSIPSSSsmllPA..GL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.68|      36|      50|     496|     534|       4
---------------------------------------------------------------------------
  496-  534 (62.74/48.01)	WTVHKTESGVTYYYNSLTGISTYERPSNfngVPEMNTVQ
  548-  583 (66.94/42.46)	WTLVTTNDGKKYYYDSISKVSSWQVPAE...VLEMRKNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.00|      39|      44|     598|     641|       5
---------------------------------------------------------------------------
  598-  636 (66.81/42.43)	DKGNTPTPGP...ISTPAAQT.................GGRDSLATRTSSGQVSASALD
  644-  702 (52.19/23.18)	DSGTPIVSAPlqaIAIPFASDlngtrvvdasvkgelvvNSKDKMKDDHVDGDMSDSSSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16822 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AERSAKAKMVEQNKLKEREREMRKRKEREEHEMERMRLKV
2) ALPGPFPFPVRGPTPPAIPFSNVKPPGVLPQVATEVLPSSTSESSISVRNGGAGSPPPDASIEKETSDIQQDEGNRKSELEAW
3) FPRVNSASGIPQQTPSAPVLKLTPPMSPAALQPPVPGQ
4) LWQRYTQDLLRKQQKDQKDKPDIDRKNTDSPNKSPRRSHGRK
5) MSSPVDVPPPSSQSPTSEAPVGVPAQGCPT
6) NSKDKMKDDHVDGDMSDSSSDSDDAETMPT
7) PNSNAAAPVVAPSNQDFSPTTAVTVSSTPFTALPAPRASQGTASDLLQDP
8) SAKEENASIFADKGNTPTPGPISTPAAQTGGRDSLATRTS
9) SSTCATNAVASDAGTTLGASTNSDTKLSNNMPTTSSAPSATSIPS
10) SVVHSAPLDSSPGTMRPPVPNQPSAPANPSSIPNTTLHNVPQQIYPPSSSVSNIPPPSQPQWLHPPPLQY
909
414
115
1067
1
682
44
587
266
342
948
496
152
1108
30
711
93
626
310
411










Molecular Recognition Features






MoRF SequenceStartStop




1) ALWQRYTQDLLRKQ
1066
1079