<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16820

Description ATP-dependent DNA helicase Q-like 4B
SequenceMSKAKPTKVNWAQHAAAFENFSCQDKFLGSNFLFSLSTQKPQPEGTCEEMLASFHLAQQSNVGFQQAYYHFDFAVNCCLSSVFIAMLAFGCPFLHITCNIQRSGRLQSSCADKAWKALFNSSLGCESYVRPGITVPVQNHKANYVVTVDLDSCNISKNAVNFESTGVSAFAKQSTHGASSYKLKVGDLGSSNITSHSRTNIFTNTNINLGSKVLQDNVRGMSIPCNYSSAATYDSLCNGEGRHVDRNSLDPIDDDEVLENIDVDQIVMEHYQSSSTPQGSISKFSPLSPVSSSSNATTIQEDILPQELCETCDHGFKLALCPHTSNHLQVMKDRLISVSNELLDNAGGLSPNQLENLFQERLLLNKKIQQLEKHLHCSSHDKYRQQSNAMISSTLVQGIRMDTSVTRFTDNLRCVSQAHMHNDLVYNENWSSPLPSFSADGLNVYSVPLEREVYTPKLLQVRYTEGSGDERWKRVDFPWTKKLEANNRKVFGNHFFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVVSPLVSLIQDQIMHLLQVNIPAAYLSANMEWPEQQEILRELVSDVCKYKLLYVTPEKIAKSDTLLRHLDALYCRGSLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKYPSTPVLALTATATASVKEDVVQALGLENCIIFRQSFNRPNLWYSVVAKTKKCLDDMDKFIKDHHFDECGIVYCLSRMDCEKVAERLQECGHKASFYHGSMDPKQRAYVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYNYSDYVNYCENDLDCRRLSQLIHFGEKFNPSDCQKTCDNCTNMFNSIEKNVTNIAKQLVELVKATGQQHSMFHILEVYKGSLNQNIKKYKHDSLSLHGAGRHLAKGEASRILRHLVIKDILTEDVKKSDLYGSVSSLLRNLSAKLYAALRMLRTVLVKEAGDGVMAYHIFGNATLQQISKKIPRTKEGLLDINGIGKAKLHKYGDRVLETIESIVGDHQKGGKNSSSGSDDAAKRRRGADIVSAVNDDDFNKSTIQSKKRVTKIGTGGNCNETLNISSYNDRLIDLELDGDDVVME
Length1115
PositionUnknown
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.08
Grand average of hydropathy-0.358
Instability index45.15
Isoelectric point7.35
Molecular weight124725.15
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16820
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.08|      24|      37|     883|     907|       1
---------------------------------------------------------------------------
  883-  907 (37.87/32.33)	ATGQQHSMFHILeVYKGSLNQNIKK
  923-  946 (38.21/27.17)	AKGEASRILRHL.VIKDILTEDVKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.12|      16|      35|     140|     155|       2
---------------------------------------------------------------------------
  140-  155 (30.60/21.26)	HKA.NYVVTV.DLDSCNI
  176-  193 (20.52/11.71)	HGAsSYKLKVgDLGSSNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.11|      18|      20|     713|     732|       4
---------------------------------------------------------------------------
  719-  737 (26.98/19.83)	IVYCLSRMDCE...KVAeRLQE
  825-  845 (28.13/11.57)	VNYCENDLDCRrlsQLI.HFGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.24|      13|      85|     705|     718|       5
---------------------------------------------------------------------------
  705-  718 (22.83/19.79)	MDKFIKDHHfDECG
  792-  804 (26.41/16.84)	LPKSIEGYH.QECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.62|      20|      36|     233|     252|       8
---------------------------------------------------------------------------
  233-  252 (36.64/21.67)	YDSLCNGEGRHVDRNSLDPI
  271-  290 (34.98/20.36)	YQSSSTPQGSISKFSPLSPV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16820 with Med34 domain of Kingdom Viridiplantae
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