<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16818

Description Reticulon-like protein
SequenceMSEAVGHASLSEKIHDKIHEYKRSSSSSDSENDEPLFVNVRKKRLFGRKDPVHTVLGGGKSADIMLWRNKPMSGGILAGVTVIWLLFEWMDYHLLTFICHSLIFFLAALFLWSNAASFINRDPPKFPEVILSEEMFLTVAQAARFQINEAFATFRFVAMGKDLKNFLLDSIMSTSVEKPGFASLGCSVHDEFTTLTPPCAALSFNLSAVSCPSRPHPRCYPPAPAGKRLAEDCMDAAGVALADLERRVMAAVKASDESGEPPLIRVMEAACCAGAGAGPSPELGQVLVSSLCFGNNTPSLWKLLNQAIAVRLVSPLHIVALLTARVIPHRRVQPEAYRLYLELMSRHGMSFSLLDSAAQRDKITKSIDEALHLSRAYGLDKIDFGHAVIFFVLTIITRLMDAILEDLGMKFVFSDKDANIYVAEDHQDMEIDSTGNLNDKRKEHRDQLRKSNTLMALEVVEKIMSNKKNKAFLHIIHLNMPEKFNGLVERFKFVEVHKSTSQSLISVKSILEKLLANIQEVLNEKFNLHKHHGLDILVDTGFGGPTAYYSVGADRSGCWISFDMFMENAMDGRHLYAISSVEILTGAFLVRAAFYLTIFKLNDPELTKALQVANQASWQETFMALWVSALRLVQRDREPWEGPVPHLDARLCMLLSIVPLAIVSIVKELDPACARSNYGEGMDANKPISRRFELVSSLQVLQQYTGLLLPPPSVVNAANNAASKAATFIANFRNGSGSLGATSQKDTSIKAAGNMLHLIVEACIARKLIDTSAYFWPGYVSLSAASKDSILVEASPWSSFMEGGQLSGSLKNALITTPAPSVVELEKLYYTALNGTEEEKPAAAKILCSASLIRGWNIQEHVVRMVVKLLSPPISPEISKSETSSHLMGQMPMISAVLFSICSVETVHIISFYGMIPEMAAALMPLCEAFGSVPPQPSYRTSLVDESSIYSVFSCAFLVLLRLWKFYKPPQEHYIAGRGGTVMLELTLDYLLLMHNHRIEFPDCGNRSKLNSLMDSSNISIGQAVYIDSFPKLRAWYLQNQACIASTLSGLCSKNPVHQVANKILNMICRKMTKGGSVPGNPSSTSSSSISGSPVNTAEDVFQRPLFPAWDILEAVPFVLEAILTACAHGRLSSRDLTTGASPRLWSKLLSIMPRHVYAFLSFHSCKREVNGLLWTLLQWYHPSHVFTGLRDLVDFFPASLATIISYFLAEITRGIWQPVSMNGIDWPSPAANLLSIESEIKEILASAGVMLPDSCSSLPGGAVPMLPLPMAALVSLTITFKLDKSLEYVHDVIGQALENCSAGSPWPSMPIIGALWTQKVRRWHDFVVLSCTRSPFTRDKDAVAQLIRSCFSFFSCPANSSLPITTHHCSVSRLLGHSISDKGLRLAPGYLYLRSCRAFYDTHFVNNVILRLVVECSGELAAGRASAGLSTARLLSSRSSLAAAASAVRQVATLGASLVCIAGGPLLVQVLYEETVPSALLSGSASGGPAATAARLLEGYAIAYMVVLSGSFVWGVGKTSPAFKSLFSSRRARSVGIHLEFIAGGVEGNVSVGCDPTTWRAYVSCLVGLLVRNVPAWVPEARLQALRKLAAGLRRWHEWELALALLERGGPSSVELVVESIISSSSC
Length1628
PositionTail
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.08
Grand average of hydropathy0.164
Instability index51.13
Isoelectric point8.03
Molecular weight178024.15
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum membrane	GO:0005789	IEA:UniProtKB-SubCell
integral component of membrane	GO:0016021	IEA:UniProtKB-UniRule
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transferase activity	GO:0016740	IEA:UniProtKB-KW

GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16818
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     247.51|      76|     173|    1075|    1168|       1
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  249-  304 (35.94/ 8.97)	MaaVKASDESGEPPliRVMEAACCAGAgagpSPELGQvlvSSLCF...GnNTPSLW.KLL...........................................
  852-  942 (116.33/52.42)	L..IRGWNIQEHVV..RMVVKLLSPPI....SPEISK...SETSShlmG.QMPMISAVLFSICSVETVHIISFYGMIPemaaalmplceaFGSVPPQPSYRTS
 1075- 1087 (-4.90/ 8.23)	..........................................................................................GGSVPGNPSSTSS
 1106- 1168 (100.13/45.48)	L..FPAWDILEAVP..FVLEAILTACA....HGRLSS...RDLTT...G.ASPRLWSKLLSIMPRHVYAFLSFHSCKR.........................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     409.23|     150|     611|     179|     341|       2
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  179-  279 (123.38/86.15)	.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PGFASLGC.SVHDEFTTLTP.PCAALS.FNLSAVSCPSRPHPRCYPPAPAGKRLAEDCMDaagvaLADLERRVMAAVKASDESgEPPLIRVMeaaCCAGAGAGP
  280-  338 (54.36/30.62)	SPELGQVLVSSLCFGnNTPSLWKLL...NQAIAVRLVSPLHIVALLTARVIP....HRRVQPE.AYR..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  777-  856 (100.35/52.91)	...................................................................lylelmsrhgmsfslldsaaqrdkitksidealhlsraygldkidfghaviffvltiitrlmdailedlgmkfvfsdkdaniyvaedhqdmeidstgnlndkrkehrdqlrksntlmalevvekimsnkknkaflhiihlnmpekfnglverfkfvevhkstsqslisvksilekllaniqevlnekfnlhkhhgldilvdtgfggptayysvgadrsgcwisfdmfmenamdgrhlyaissveiltgaflvraafyltifklndpeltkalqvanqaswqetfmalwvsalrlvqrdrepwegpvphldarlcmllsivplaivsivkeldpacarsnygegmdankpisrrfelvsslqvlqqytglllpppsvvnaannaaskaatfianfrngsgslgatsqkdtsikaagnmlhliveaciarklidtsayfwPGYVSLSA.ASKDSILVEAS.PWS..S.FMEGGQLSGSLKNALITTPAPS...............VVELEKLYYTALNGTEEE.KPAAAKIL...CSASLIRGW
  875-  989 (131.15/70.74)	SPEISKSETSSHLMG.QMPMISAVLfsiCSVETVHIISFYGMIPEMAAALMPlceaFGSVPPQpSYR..............................................................................................................................................................................................................................................................................................................................................................................................................................................................tSLVDESSIYSVfSCAFLVlLRLWKFYKPPQEH...YIAGRGGTVMLELTLD............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.90|      16|      78|    1450|    1465|       3
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 1450- 1465 (28.14/16.49)	RQVATLGASLVCIAGG
 1531- 1546 (28.76/17.01)	RRARSVGIHLEFIAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     183.86|      40|     271|    1289|    1357|       4
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 1289- 1328 (74.71/30.33)	YVHDVIGQALENCSAGSPWPSMPIIGALWTQKVRRWHD..FV
 1369- 1406 (49.50/58.40)	..HCSVSRLLGHSISDKGLRLAP..GYLYLRSCRAFYDthFV
 1563- 1600 (59.65/20.64)	YVSCLVGLLVRNVPAWVPEARLQALRKL.AAGLRRWHE..W.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16818 with Med33 domain of Kingdom Viridiplantae
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