<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16815

Description U-box domain-containing protein 34
SequenceMVLDHKPRHLFCRKFRNPDVPSNVTKLAPDFCTVYVIYKGKPVTVRSAKIPAPCSNTPPRQPQPVPAAPTNFHDPDDTVKNPFGRGNWRGVAAPSGIPDRRSFEKSDHVRPPSRDRLRGSAGHAIHDSLDISYFPPRSSTSRDSSEDFDVQRSLDLIKPPEFGEIFELHMNNMPDSSPTSGQSNRELEAEMKRLKVELKQTMDMYSTACKEAITAQQKAKELHQWKMEETRKVEEAKHAEETALALVEMEKAKCKAAIEAAQAAQRLAELESQKRMHAELKAKREAEEKVKALNALAHNDQRYRKYTIEAIELATEYFSESLKIGEGGYGPVYRASLDHTPVAIKVLRPDAAHGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEHMDNGSLEDRLFRRGNSPSIPWPLRFKIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDRNYTSKISDVGLARLVPASVANSVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGVLLLQIITAKPPMGLTHHVERALDRGTFTDLLDQTVPDWPMEDVIGFARLALKCSELRRKDRPDLGTVILPELNRLRNLGHAFEANRSCSSSTTSGSNEGASLSSAHQRAKSTSQIALQNLTVNS
Length633
PositionTail
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.06
Grand average of hydropathy-0.523
Instability index44.22
Isoelectric point8.58
Molecular weight70740.75
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein serine kinase activity	GO:0106310	IEA:UniProtKB-EC
protein threonine kinase activity	GO:0106311	IEA:UniProtKB-EC

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16815
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.73|      23|      23|     227|     249|       1
---------------------------------------------------------------------------
  227-  249 (35.59/21.97)	MEETRKVE.EAK.HAEETALALVEM
  253-  270 (21.87/11.04)	.....KCK.AAI.EAAQAAQRLAEL
  272-  293 (16.27/ 6.58)	SQKRMHAElKAKrEAEEKVKAL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     121.55|      22|      23|      53|      74|       2
---------------------------------------------------------------------------
   39-   60 (37.13/18.62)	KGKPVTVRSAKIPAP...C....SNT...........PPR
   61-   85 (34.12/16.55)	QPQPVPAAPTNFHDPddtV....KNP...........FGR
   86-  113 (22.11/ 8.27)	GNWRGVAAPSGIPD............rrsfeksdhvrPPS
  114-  137 (28.19/12.46)	RDRLRGSAGHAIHD.....sldiSYF...........PPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.79|      24|     133|     374|     413|       3
---------------------------------------------------------------------------
  374-  399 (39.12/50.18)	VLLLGACPEYgcLVYEHMDNGS.LEDR
  426-  450 (38.67/14.00)	LFLHQAKPEP..LVHRDLKPANiLLDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.54|      23|     387|      10|      33|       4
---------------------------------------------------------------------------
   10-   33 (38.81/28.60)	LFcRKFRNPDVPSNVT.KLAPDFCT
  400-  423 (37.74/21.97)	LF.RRGNSPSIPWPLRfKIAAEIAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.28|      34|     420|     155|     195|       5
---------------------------------------------------------------------------
  161-  195 (57.34/48.30)	EFGEIFELHMNNMPDSSPTSGqSNR..ELEAEMKRLK
  564-  585 (27.61/11.22)	......ELRRKDRPDLGTV.........ILPELNRLR
  586-  619 (49.32/24.26)	NLGHAFE..ANRSCSSSTTSG.SNEgaSLSSAHQRAK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16815 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GEIFELHMNNMPDSSPTSGQSNRELEAEMKRL
2) SAKIPAPCSNTPPRQPQPVPAAPTNFHDPDDTVKNPFGRGNWRGVAAPSGIPDRRSFEKSDHVRPPSRDRLRGSAG
163
47
194
122










Molecular Recognition Features






MoRF SequenceStartStop




NANANA