<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16813

Description U-box domain-containing protein 53
SequenceMEKEFVEEVPEPSAASLLSIAVAVNGSKSSKRAARWALDKFLPEGIVHFKLLYVRPKITVVPTPMGNYLPISKVRDDVATAYKKEIEWHTTSMLLTYRQMLTDRRVEAENVTIESDDVADALAREISKLRISKLVVGASSQNVFRNFKGHKLSSKIANCCPSFCTVYVVSKGKLASIRAATSQVDDLTNDEISTKNLPCTVLHSGSTSSSSCGTFKEGRSSLFIYEDTSSSSVSLSEQQFDSRIGSSSGSSLFMDQSLVMENAASVDQIDIDSELQKLRVELKHLQNMVEVVQNESIASSEVLSAHHIKEEAILKEIEGREEVIRKLTRLEIKRREAVEREAEYIMEYVEKEVQFGRDAEESAAQASCHKERFEKAFSCETEPYKTYTWEEIESATLCFSDSLKIGMGANGTVYKGRFHHTLAAVKVLHSNEAHGNKQFKQELDILGRIRHPHMLVLLGACLDRGCLVYEFMENGSLDDRLQCRDNSPPLPWFFRFRIAWEVASALAFLHSSNPDPIIHRDLKPANILLDCNFVSKIGDVGLSTLLSTVNFPVSSIYKDTAPVGTICYIDPEYQRTGRVSPKSDVYALGIVILQLLTGKLPMGLAYIVESAVEDDSLSDILDAKAGQWPDKETQELAQLGLHCAELRHKDRPDLEDQVLPVLERLRIMADEAKILVNHPSPTPPSHFICPILQEVMEDPCVASDGYTYDRKAIDTWLEVNETSPMTNLPLPNKNLIPSHSLRSAIMEWRSIAK
Length753
PositionTail
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.07
Grand average of hydropathy-0.251
Instability index42.88
Isoelectric point5.52
Molecular weight84189.97
Publications
PubMed=28902843

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16813
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.60|      28|     166|     490|     519|       3
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  490-  519 (45.71/38.43)	LPWFFRFRIAWEVASALAfLHSSnPDPIIH
  659-  686 (51.89/33.08)	LPVLERLRIMADEAKILV.NHPS.PTPPSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.19|      11|      38|      76|      86|       4
---------------------------------------------------------------------------
   76-   86 (19.90/11.83)	DDVATAYKKEI
  116-  126 (19.29/11.27)	DDVADALAREI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.89|      64|     526|       1|      74|       5
---------------------------------------------------------------------------
    1-   74 (97.88/104.17)	MEKEFVEEVPEPSAASLLSiavAVNGSKSS..KRAARWALDKFL.PE................GIVHFKLLyvRPKItvvptPMG.NYLPISKV
  529-  612 (89.02/67.67)	LDCNFVSKIGDVGLSTLLS...TVNFPVSSiyKDTAPVGTICYIdPEyqrtgrvspksdvyalGIVILQLL..TGKL.....PMGlAYIVESAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.82|      28|      40|     127|     159|       6
---------------------------------------------------------------------------
  127-  159 (37.97/40.16)	SKlriSKL..VVGASSQnvFRNFKGHKLSSKIANC
  170-  199 (42.85/28.78)	SK...GKLasIRAATSQ..VDDLTNDEISTKNLPC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.39|      18|      36|     305|     322|       7
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  305-  322 (30.80/25.24)	AHHIKEEAILKEIE.....GR..EE
  337-  361 (20.59/14.10)	AVEREAEYIMEYVEkevqfGRdaEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16813 with Med32 domain of Kingdom Viridiplantae
Unable to open file!