<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16808

Description U-box domain-containing protein 33
SequenceMAGSSTPNPLGRRVPESVPATATRWPEIVEELPESRAVGEEEEEKVYVALPLEVKEGKETLQWVLKNISADEKLVILHIHRPPQLIPMMGAMVPVRQLEEHRVRSYRQQERMKVETILDEYLDICSKSKFHAEKLVFEMNDVSNGIVELVARLGIAKLVMGAAADRCYSKKMTSPKSKTAIAVQQKAHLSCKIWFVCKGHLICTRDGAIDRTVTPESPSFSSSSRSSQSGQLRSMSLPQGQTEKPNWVIVPIPRSTSEKMISHKKASVLGLTFPSPGKLTATQSKILAEGIASVTNTCEGCLKRLQSSGNSSYIFSPNSGVCSSSSSSARHDDEESGSGSRRLPHLLSEEDLQFSSPPPELEAYDLTSDVYERLQEVHLESEKLKLESYKETCKRQKAESAAFDALRKAKQVEYQYKAVLKKKQEVDEVLDFERKDTEKVKKERDEYVQELQKARDRESHLMAQITDTEHVVKEFEEKLLKALNKLQSLRTECDRLKQERDIALQEAEVLLQKKGEASNRAKNLSFSVFTYSELAEATGNFDDSLKIGEGGYGSVFKGFLRHTMVAIKMLNSQGMQGQEEFHQEMEVLSMVRHPHLVTLIGTCPEAWALIYEYLPRRSLDDRLACKGNTPPLPWHVRMRIAAEICSALIFLHSSKPHGIVHGDLKPANILLDANFVSKLGDFGISRLLGRSNVTETPFWHTIPKGTLPYMDPEFVSSGDITLHSDVYSFGIILLHLLTGMPAMGIINKVKDAVHEEQLSLMLDSSAGNWPYDKAKQVVELALRCCETSRKNRPDLARDAWRVLMPMANMNDCGSSSGSVSQGMFVPSYFICPISKELMKDPQIAADGFSYEAEAIRRWFDSGHNTSPMTNLRFAHQVLIPNRALRCAIEEWK
Length892
PositionTail
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.07
Grand average of hydropathy-0.407
Instability index53.55
Isoelectric point6.72
Molecular weight100111.46
Publications
PubMed=28902843

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16808
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.58|      22|      99|     215|     236|       4
---------------------------------------------------------------------------
  215-  236 (39.47/22.90)	PESPSFSSSSRSSQSGQLRSMS
  317-  338 (40.11/23.39)	PNSGVCSSSSSSARHDDEESGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.76|      39|     275|      82|     129|       5
---------------------------------------------------------------------------
   82-  129 (59.37/62.37)	PPQLIPM.MGAMVPVRQLEEHrvrsyRQQERMKVETildeYLDICSKSK
  358-  397 (62.40/42.36)	PPELEAYdLTSDVYERLQEVH.....LESEKLKLES....YKETCKRQK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16808 with Med32 domain of Kingdom Viridiplantae
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