<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16807

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMREEIAPAWERVTEFTKAAQEKGTEAVTWAVRLSSGLASFGVSLPSPELAHVLVSHVFWANEGPLAWKYLEKAIAAGLAPPMLLIALLSSRSLSLSLSLCLSLILGSFRVLPYFLITENQIRIMIMVSVDDVLHLSEIFGIQASEPGTLVVEFTFCIVWQLLDATLDDEGLLELTPEKKSRWPTRSYEMDIDGKDYYLKTGYSESLRKQNSVKAVELILHFLQNKKISRLISLARENMPCQWSSFTQHLGLLSTNSSALRNSSLQLGTLKQLGGQCHGTSHSTLWIPIDLYLEDCIDGSVAATNAIEILSGLLKTLRAVNQATWHDSFLGLWMASLRLVQRERDPHEGPVPRLDSRLCILLSVTTLAIATIIDEEEANPIGEVEQTIQWKRKAACGNCRQGLVSCLQILGDYESLLAPPSSVTFAANLAAAKAMISVSGLPNGSGFLECINLNDNSLNCSGNLWHLIVEACISRKLLDTSAYFWPGYVSGKMKPIPHNMTSQVAGWSTLMKGAPLTSSLVNALARNPASSLAELEKIFEIAFNGSDDDKVSAASILCAASLIRGWNIQEHAVRFAMKLLSPPVPIDYSGTDSHLISHGPVMNVVLTGISSVDCVQVFSFHGLVPELAGALMAICEVFGACVPNIAWTITGEEVTAHSVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTLEYLLLLCNARLLSSCNSNKECGSKNGMSITCSSLTQPIFVDSFPKLKVWYRQHQACLASTLSGLVHGTPVHQNVDGILNMMFRKINRVSSQSVGPGASGSSSLSSSSGPGSEDSHARPMLPAWDIMEAVPFVVDAALTACSHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANVSIVEEHIKKIVAATGVDVPSLVDGPEGGSSQATLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWTDFLVFSASRTVFHHNDDAVVQLLRSCFSATLGFSGSQISTNGGVGGLLGHGFGSHFSGGLSPVAPGILYLRTYRCIKDIIRLTEEILSILMQSVKEIAETAASKERFELLKKTKNGLKYAKGSLCTAMAKVKVAASLAATFVWLSGGSGLIHGLIQEMLPSWFLSVHELDEDGRCGSLAYALGGYALAYFAAICGIFAWGIDSMPSSKRRPRIIESHMEFLASAMDGKISLGCDSALWRGYVSGFLSLMVDCAPSWVVEVDVGVLRRLSRGLRLWNEDELALALLRKGGVGAMASAAEVILASD
Length1288
PositionTail
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.08
Grand average of hydropathy0.219
Instability index41.62
Isoelectric point6.13
Molecular weight139157.15
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16807
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.69|      44|     306|     839|     905|       1
---------------------------------------------------------------------------
  622-  664 (54.96/18.90)	LVP.ELAG.......................ALMAICEVFG.ACVPNIAwTITGEEVTaHSVFSNAFI....
  839-  884 (70.74/34.72)	LSPRELAT.......................GLKDLADFLP.ASLATIV.SYFSAEVT.RGVWKPAFMngTD
  926-  985 (45.99/37.79)	L.PLPLAAfvsltitykldkaserflnlagpALENLAASCPwPSMPIVA.ALWTQKVK.R..W.......TD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.06|      26|     538|      30|      56|       2
---------------------------------------------------------------------------
   30-   56 (40.83/26.38)	AVRLSSGLASFGVSLP.SPELAHvLVSH
  571-  597 (43.24/23.85)	AVRFAMKLLSPPVPIDySGTDSH.LISH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     320.59|     108|     389|     665|     831|       3
---------------------------------------------------------------------------
  229-  279 (61.76/15.23)	RLISLARENMPC........QWSSFTQHLGLLSTNSSALRNSSLQLGTLKQLGGQCHG..........T.....................................................................................
  704-  831 (173.36/145.83)	RLLSSCNSNKECgskngmsiTCSSLTQPIFVDSFPKLKVWYRQHQACLASTLSGLVHG..........TPVHQ.NVDGilnmmfrkinRVSSQSVGPG..............ASGSSSL.SSSSGPGSEDSHARPMLPAWDimEAVPFVVDAAL
 1126- 1221 (85.46/49.47)	......................................VWL........SGGSGLIHGliqemlpswfLSVHElDEDG..........RCGSLAYALGgyalayfaaicgifAWGIDSMpSSKRRPRIIESHMEFLASAMD..GKISLGCDSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.42|      22|     587|     424|     446|       4
---------------------------------------------------------------------------
  424-  446 (34.60/26.59)	FAANLAAAKAMIS....VSGLpNGSGF
 1011- 1036 (35.81/21.71)	FSATLGFSGSQIStnggVGGL.LGHGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.08|      20|     587|     667|     689|       5
---------------------------------------------------------------------------
  667-  689 (32.31/33.00)	LRLWkfNHPPLEYCIMGDGApVG
 1256- 1275 (35.77/22.44)	LRLW..NEDELALALLRKGG.VG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.91|      22|     902|     134|     157|       6
---------------------------------------------------------------------------
  134-  157 (35.00/27.25)	HLSEifGIQASEPGTLVVEFTFCI
 1039- 1060 (41.91/25.76)	HFSG..GLSPVAPGILYLRTYRCI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16807 with Med33 domain of Kingdom Viridiplantae
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