<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16800

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMAEKQLIVIVEGTAALGPYWQTVVSDYLEKIIRCFCGNELSGQKLAGANPELALIVFNTHGPYSAFLVQRSGWTKDVDVFLLWLLRVPFSGGGFGDVAIAEGLSEALMMFAIPTNASQSLQNLDGQRHCILVAASNPYPLPTPVYSPSISNKEHGDNAETPTDTCLNDAESVAKSFGQCFVSLSVICPRQLPKLRAIYNAGKRNSRTADPAVDNVKNPHFTILLSESFVEARAALTRPMMGNLVTNQGMVKLDTIPAVPGPATTSIPSVTGPMINRPQNPVASIPPATVKVEPITVSTMVSGPGYPHIAPISSVTSQGVPSLQASSPSPTSHEMNATNESMQEHKPLVNPVPQTLRPVGPAPANVNILNTLSQHRQVVNSASITGASSIGLQTMGGNPMAMHVSNMISTGMASSAMPGIASVAGSGALMSTAQVAQNAALGSFASSNSHISGNSNMGIAPALTNLQISAGMGQSLPVVGQGNLSASAQTGQGGISMAPNIMNGLGPTSMASSSGTMIPTPGISQQQGVNSLGLTNNAAINMPLTQPGAQQTQPKYVKIWEGALSGQRQGQPVFICKLEGYKSATASESLAADWPPSMQIVRLIAQDHMNNKQYVGKADFLVFRTLNQHGFLAQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSGQQQQQQQLQQQLQQQQLQQQTQQNQHLQQQQASQQQQQLAMVGAGMNQTFVQGSGRPQIHPQAKISSSTMSNGGFLP
Length756
PositionUnknown
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.05
Grand average of hydropathy-0.114
Instability index44.28
Isoelectric point8.67
Molecular weight79797.11
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16800
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.09|      19|      20|     680|     698|       1
---------------------------------------------------------------------------
  674-  692 (33.48/17.28)	KPQVSGQQQQQQQLQQQLQ
  693-  711 (35.61/18.87)	QQQLQQQTQQNQHLQQQQA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     104.85|      23|      23|     258|     280|       2
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  258-  278 (32.52/14.42)	.........V............PGPATTSI.PSVTGPMI.NRPQ
  279-  304 (29.20/12.19)	NP....vasI............P.PATVKVePITVSTMV.SGPG
  305-  347 (20.12/ 6.08)	YPhiapissVtsqgvpslqassPSPTSHEM.NATNESMQeHKPL
  506-  521 (23.00/ 8.02)	........................PTS..M.ASSSGTMI.PTPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.08|      44|      50|     115|     163|       3
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  115-  163 (68.15/51.06)	NASQSLQNLDGQrhC.ILVAASNPYPLP..TPVYSpsiSNKEHGDNAETPTD
  167-  213 (66.93/37.00)	NDAESVAKSFGQ..CfVSLSVICPRQLPklRAIYN...AGKRNSRTADPAVD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.05|      18|      21|     464|     481|       4
---------------------------------------------------------------------------
  464-  481 (33.54/17.78)	NLQISAGMGQ...SL.PVVGQG
  482-  503 (24.51/11.03)	NLSASAQTGQggiSMaPNIMNG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.16|      15|      21|     547|     561|       5
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  547-  561 (29.19/16.87)	GAQQTQPKYVKIWEG
  565-  579 (28.97/16.69)	GQRQGQPVFICKLEG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.21|      12|      19|     430|     441|       7
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  430-  441 (18.70/ 9.96)	STAQVAQNAALG
  446-  457 (21.50/12.60)	SNSHISGNSNMG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.98|      23|      25|     374|     396|       9
---------------------------------------------------------------------------
  374-  396 (37.27/21.89)	HRQVVNSASITGASSIGLQTMGG
  402-  424 (36.71/21.45)	HVSNMISTGMASSAMPGIASVAG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.72|      16|      43|       2|      19|      10
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    2-   19 (23.86/18.29)	AEKQLIVIVEGTAalGPY
   48-   63 (30.86/17.65)	ANPELALIVFNTH..GPY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.03|      25|      48|     595|     622|      12
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  595-  622 (35.75/36.03)	PSmQIVRLIAQDHMNnkQYVG...KADFLVF
  646-  673 (38.28/25.32)	PS.QTLLLSVSDKAG..RLIGmlfPGDMVVF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16800 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PHIAPISSVTSQGVPSLQASSPSPTSHEMNATNESMQEHKPLVNPVPQTLR
2) VKLDTIPAVPGPATTSIPSVTGPMINRPQNPVASIPPAT
306
250
356
288










Molecular Recognition Features






MoRF SequenceStartStop




NANANA