<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16799

Description U-box domain-containing protein 52
SequenceMKRLRSELKHTMKMYSNACREALTAQHRTMELHRWKVEGEHRIEEARKAEEAALAMAHREKAKAQAAMEAAEASKKIAELETKKRQDAEMKAVDAAEEKKKVLTAMAKSDFTYRRYDIGEIKMATDFFAESLKIGEGGYGPVFGGRLDHTLVAIKVLRLDTAQGRSQFQQELEILSCIRHPNMVLLLGACLEFGCLVYEFMANGSLEDRLSRRGNSPPIPWQHRFRIAAEIATGLLFLHQTKPKPLVHRDLKPANILLDHNFVSKISDVGLARLVPSVADNVTQSRMTSAVGTFCYIDPEYQQTGMLGIKSDVYSLGILLLQLITGRAPMGLTHQVERAVENGEFEYVLDPTVEDWPVEEALSLAKMALRCAELKRKDRPDLGKVVLPELDRLRKIGESNMQSSFIGGGEAHAAQAHTQISMQDLRSGPLNGLSGYETSRTRSSVSLGTGRRFREGLLSLFLLLRHFLLAGAISASLVGVNYGLLGNNLPSPNKVAPLLHSIGVGCVKLYDADPSVLRAFANTGVELIIGVPDYCVDKVRDPDRALVWTRANVQAYLPGTRIAAIIVGNEILTGNDTSLSPPWNPSIPPSLPSASIARPVGVARALPTRKRERERDEGRREKVFSNVCYRPRTYMHISSN
Length640
PositionTail
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.06
Grand average of hydropathy-0.253
Instability index40.36
Isoelectric point9.12
Molecular weight70949.94
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	IEA:InterPro
protein serine kinase activity	GO:0106310	IEA:UniProtKB-EC
protein threonine kinase activity	GO:0106311	IEA:UniProtKB-EC

GO - Biological Process
carbohydrate metabolic process	GO:0005975	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16799
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.39|      14|      15|     106|     120|       1
---------------------------------------------------------------------------
  106-  120 (22.96/19.83)	MAkSDFTYRRYDIGE
  123-  136 (25.43/16.60)	MA.TDFFAESLKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.02|      27|     356|      31|      58|       4
---------------------------------------------------------------------------
    1-   27 (46.62/29.72)	MKRLRSELKHTMKMYSNACREALTAQH
   32-   58 (45.40/27.96)	LHRWKVEGEHRIEEARKAEEAALAMAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.77|      14|      20|      60|      73|       7
---------------------------------------------------------------------------
   60-   73 (22.86/13.43)	EKAKAQ.AAMEAAEA
   81-   95 (18.91/10.05)	ETKKRQdAEMKAVDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16799 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) RTYMHIS
632
638