<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16799

Description U-box domain-containing protein 52
SequenceMKRLRSELKHTMKMYSNACREALTAQHRTMELHRWKVEGEHRIEEARKAEEAALAMAHREKAKAQAAMEAAEASKKIAELETKKRQDAEMKAVDAAEEKKKVLTAMAKSDFTYRRYDIGEIKMATDFFAESLKIGEGGYGPVFGGRLDHTLVAIKVLRLDTAQGRSQFQQELEILSCIRHPNMVLLLGACLEFGCLVYEFMANGSLEDRLSRRGNSPPIPWQHRFRIAAEIATGLLFLHQTKPKPLVHRDLKPANILLDHNFVSKISDVGLARLVPSVADNVTQSRMTSAVGTFCYIDPEYQQTGMLGIKSDVYSLGILLLQLITGRAPMGLTHQVERAVENGEFEYVLDPTVEDWPVEEALSLAKMALRCAELKRKDRPDLGKVVLPELDRLRKIGESNMQSSFIGGGEAHAAQAHTQISMQDLRSGPLNGLSGYETSRTRSSVSLGTGRRFREGLLSLFLLLRHFLLAGAISASLVGVNYGLLGNNLPSPNKVAPLLHSIGVGCVKLYDADPSVLRAFANTGVELIIGVPDYCVDKVRDPDRALVWTRANVQAYLPGTRIAAIIVGNEILTGNDTSLSPPWNPSIPPSLPSASIARPVGVARALPTRKRERERDEGRREKVFSNVCYRPRTYMHISSN
Length640
PositionTail
OrganismApostasia shenzhenica
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Asparagales> Orchidaceae> Apostasioideae> Apostasia.
Aromaticity0.06
Grand average of hydropathy-0.253
Instability index40.36
Isoelectric point9.12
Molecular weight70949.94
Publications
PubMed=28902843

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	IEA:InterPro
protein serine kinase activity	GO:0106310	IEA:UniProtKB-EC
protein threonine kinase activity	GO:0106311	IEA:UniProtKB-EC

GO - Biological Process
carbohydrate metabolic process	GO:0005975	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16799
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.39|      14|      15|     106|     120|       1
---------------------------------------------------------------------------
  106-  120 (22.96/19.83)	MAkSDFTYRRYDIGE
  123-  136 (25.43/16.60)	MA.TDFFAESLKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.02|      27|     356|      31|      58|       4
---------------------------------------------------------------------------
    1-   27 (46.62/29.72)	MKRLRSELKHTMKMYSNACREALTAQH
   32-   58 (45.40/27.96)	LHRWKVEGEHRIEEARKAEEAALAMAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.77|      14|      20|      60|      73|       7
---------------------------------------------------------------------------
   60-   73 (22.86/13.43)	EKAKAQ.AAMEAAEA
   81-   95 (18.91/10.05)	ETKKRQdAEMKAVDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16799 with Med32 domain of Kingdom Viridiplantae
Unable to open file!