<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16775

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMGTTDGNVHEVYIEPFFFYNTFYDKKMSQQRMNYPSGGTSQNVINIDNIEVVRSRMIQVNDAQSEFLANLSASDDPTSLNWITFLNKINTFLSKHTGLSNTFIESTLRKIMLYPKEAPPVELEQIFNTLLRTKQIPEIENLEQEIKQEISIQENLLNLELELKKNLNDIDDDNKWDKLFDEWDKRYKEHDYIASQSSIICENILGDNNNLKRRLEDTIDLDKESRDDVENVEDLTIEKVLAFMSSGIQEGKGPIPFK
Length257
PositionHead
OrganismRhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) (Arbuscular mycorrhizal fungus) (Glomus intraradices)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.09
Grand average of hydropathy-0.630
Instability index62.74
Isoelectric point4.60
Molecular weight29881.17
Publications
PubMed=30271968

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16775
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.47|      14|      16|     111|     124|       1
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  111-  124 (26.68/14.68)	MLYPKEAPPVE.LEQ
  129-  143 (19.79/ 9.59)	LLRTKQIPEIEnLEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.77|      60|     156|      23|      93|       2
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   23-   93 (79.60/88.97)	YDKKMSQQrmNYPSGGTS...QNVINiDNIEVVRsRMIQVNDAQSEflanlsASDDPTSLNWITfLNKINTFLS
  182-  244 (96.17/67.23)	WDKRYKEH..DYIASQSSiicENILG.DNNNLKR.RLEDTIDLDKE......SRDDVENVEDLT.IEKVLAFMS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16775 with Med8 domain of Kingdom Fungi
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