<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16771

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMEIEEPYTVSFRDPEWLLSHPEGLTLENVLDYFAESPFWDSQSNNEVLKMQTKFNFLPDHKPLDITKMTGIEFYVVQADPPFFFIVQKRKRISEYEARPLASYYIIRGIVYQAPDLYTIIGSRIYTSLYHLHNVFNNIREHVNFHPATGYTWKSDKDDSHAILGNSRNLTEFHQAADVAYYSVTRKLYEERERAIKNVEEDNERERERIHEALLLKQQAEKATERPQEKDQTTKKKDKRKRTKKTDESKTEIKKKKKKHEKKTHKLSDSNTSAKNILLQKSGDDSVMDF
Length289
PositionHead
OrganismRhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) (Arbuscular mycorrhizal fungus) (Glomus intraradices)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.10
Grand average of hydropathy-0.962
Instability index46.46
Isoelectric point8.38
Molecular weight34168.07
Publications
PubMed=24277808
PubMed=30271968
PubMed=29355972

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364143
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP16771
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.91|      17|      18|     234|     250|       1
---------------------------------------------------------------------------
  216-  231 (19.43/ 7.13)	.KQQAE..KATERPQEKDQ
  234-  250 (27.35/12.24)	KKKDKR..KRTKKTDESKT
  253-  271 (22.14/ 8.88)	KKKKKKheKKTHKLSDSNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.93|      23|      27|     132|     154|       2
---------------------------------------------------------------------------
  132-  154 (44.65/27.00)	HNVFNNIREHVNFHPATGYTWKS
  160-  182 (40.28/23.82)	HAILGNSRNLTEFHQAADVAYYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.39|      17|      17|      46|      62|       3
---------------------------------------------------------------------------
   46-   62 (30.50/21.60)	EVLKMQT.KFNFLPDHKP
   64-   81 (25.89/17.35)	DITKMTGiEFYVVQADPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16771 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERAIKNVEEDNERERERIHEALLLKQQAEKATERPQEKDQTTKKKDKRKRTKKTDESKTEIKKKKKKHEKKTHKLSDSNTSAKNILLQKSGDDSVMDF
192
289










Molecular Recognition Features






MoRF SequenceStartStop




1) TTKKKDKRKRTKKTDESKTEIKKKKKKHEKKTHKLSDSNTSAKNILLQKSGDDSVMDF
232
289