<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16769

Description Uncharacterized protein
SequenceMSGGFFNNVNQQINVNAAASSSNDWRLLLPDEERKANVGMLFKLFELMKNTFTTNQRFIASKRWEDEAYNKANSKEEYQQSISTKMQHVKRQLQQQQNQQAASVQQQALQVAQQQVTPQQEVKQQNLQQPLLSQISQQQSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQFHSPQQQEQIRQLVQRRTQMQQQQQQQQQQLMQLFQQQQQQQQQQVQQQQQQSQQTQQALRNQHMQLYQLLQANPQYQQKILQQEAVRKMQLAGLVQRTQQPGQQTPQQTHQMLQTAGANFARPTGPQVSSSPRPQQGQFRFNNAPLQQRVNLGSDAINSEDFVSFLRAQAQVQVQAQAQAQAQVAQAAQAVQAQINQQQQQTPIMNQPKTPQQTNQDLSMSRLKQGTALNNAANNANGMPMKISPNPNRIQRTPNMTPNMTPNMTPNMTPNMTPNMTPNITSANLEMMNMIQNLGLSIGGNTMNTVSAAKTNVPPKVPSRTQTPVQVNKMIQGNPNAAANKILSPVIQQNQNVSPVQGTSAHVPQVSTNTINSQQNNGMMLQANTGINLSQSNVGINIQNARPPPNNMLAQMLAANKINIMAQNVTAANQLFSGVNPLLAAQAQAQVQAQVQAQSNAMLAQSNSAIVAAKPTLTQASSIGIPNSTFRPSSQGQQQSNTQTNPNMGQSSSSTSVTQTNLAVLNEKEAQEALNQIATLDARAKERRIQYHEIHDLTDDEKSKIMEKLKELQPMYHEVDKVLPYFWHYTKSSQGTYRLLGMKYMIEDQLKALPDKFLLRLELVDSLLQQFRKYFVFVESRRRGIVDTPGLNNVNPVLPPQQRPQPQVENIIQPRINPSDLKLPKRDNSGPGGPGTKKRRQSSVDGEQPSKKAASSKLPDVMIIDPPSKSAEANATVPSHAGGNSIIIITDDNVKSEEQQLQKNLQGESSQEGGVNKNTISLPLKDDVSEELQKNYIDSDVSMEGVRKQGQRLVIKSREYLKSLQHNPARHRRPIIEGFKPSNLTSQYDIGNMFALYNTA
Length1038
PositionTail
OrganismRhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) (Arbuscular mycorrhizal fungus) (Glomus intraradices)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.04
Grand average of hydropathy-0.916
Instability index64.27
Isoelectric point9.85
Molecular weight116639.22
Publications
PubMed=30271968

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16769
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.16|      17|      17|     141|     157|       1
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  139-  155 (37.02/ 8.60)	QSQQQQQQQQQQQQQQQ
  156-  172 (39.14/ 9.56)	QQQQQQQQQQQQQQQQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.71|      15|      15|     435|     449|       2
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  426-  446 (23.54/ 8.52)	SPNpnriqrTPNMTPNMTPNM
  447-  462 (25.17/ 9.71)	TPN.....mTPNMTPNMTPNI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.75|      30|      33|     218|     250|       4
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  213-  240 (52.25/10.43)	...M..QLFQ..QQQQQQQQQVQQQQQQSQQTQQA
  268-  300 (36.44/ 7.19)	VRkM..QLAGlvQRTQQPGQQTPQQTHQMLQTAGA
  339-  369 (33.07/ 6.50)	IN..seDFVS..FLRAQAQVQVQAQAQAQAQVAQA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.50|      27|      30|     934|     963|       6
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  934-  963 (37.81/35.47)	SEEqqLQKN.LQGESSQEgGVNKNTISLPLK
  967-  994 (42.70/26.94)	SEE..LQKNyIDSDVSME.GVRKQGQRLVIK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     258.33|      55|     232|     645|     699|       8
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  475-  517 (62.74/21.88)	NLG.....LSIGGNT........M..NTVSAAKT.......................NVPPK....VPSRTQTPV......QVNKMIQGNP
  518-  601 (44.90/13.35)	NAAANKILSPVIQQNqnvspvqgT..SAHV...PqvstntinsqqnngmmlqantgiNLSQ.SNVGINIQNARPPPNnmlAQMLAANKIN.
  602-  639 (45.54/13.66)	IMAQN..VTAANQ...........lfSGV...NP.......................LLAA...........QAQAQ...VQAQVQAQSNA
  640-  684 (73.80/27.17)	MLAQSNS....................AIVAAKP.......................TLTQASSIGIPNSTFRPSSQ...GQQQSNTQTNP
  833-  856 (31.36/ 6.88)	................................NP.......................VLP.......PQQ..RPQPQ...VENIIQPRINP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.29|      23|      27|     729|     753|       9
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  723-  747 (33.57/35.51)	KERRIQYHEIhdLTDDEKSKIMEKL
  748-  764 (31.13/23.51)	KELQPMYHEV....D....KVLPYF
  769-  788 (32.59/25.00)	KSSQGTYR....LL.GMKYMIEDQL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.99|      17|      26|     887|     907|      10
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  887-  907 (24.70/30.10)	PSKKAASSklpdVMII.DPPSK
  916-  933 (26.29/18.26)	PSHAGGNS....IIIItDDNVK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.08|      17|     315|       3|      19|      13
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    3-   19 (31.47/19.03)	GGF.FNN..VNQQINVNAAA
  319-  338 (22.61/11.25)	GQFrFNNapLQQRVNLGSDA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16769 with Med15 domain of Kingdom Fungi
Unable to open file!