<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16759

Description Uncharacterized protein (Fragment)
SequencePYKIXXXXXXXXQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQNQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQMASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMIQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Length553
PositionHead
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.657
Instability index54.29
Isoelectric point9.47
Molecular weight60186.11
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16759
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      13|      61|     245|     257|       1
---------------------------------------------------------------------------
  245-  257 (27.51/14.81)	SDASGMYMKNTP.P
  307-  320 (23.70/11.91)	SPRSGTNMMNTPsP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     316.36|      60|     179|     321|     380|       2
---------------------------------------------------------------------------
  321-  379 (107.33/35.06)	QQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFR.QSQM......QGL.GQN.QMSQLHDLQGQQ...KFQ.
  380-  429 (58.37/15.68)	....QLHGQHQMQFSQPM...GHQQ.......FQ.GRQMasghvqHGI.GQS.QLG.....QGNQlnrHLSQ
  437-  492 (76.75/22.95)	ALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQF.............GLaGNNpQRSHASQMLSDQ...MFNM
  502-  546 (73.90/21.83)	QQQQQQQQQHNTQGAFGNMQ.PNAQN........lQSNM......VAL.QNA.Q.......QNHP...NFAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.11|      18|      64|     197|     214|       3
---------------------------------------------------------------------------
  197-  214 (29.21/17.99)	IQEQENLLRAAVNS........GEGL
  216-  240 (16.36/ 6.04)	LPGDQRQMTPALPMhlvdllpvGDG.
  263-  277 (24.54/13.64)	IGNQGNLLQA...S........GAQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16759 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQNQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQMASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMIQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
245
553










Molecular Recognition Features






MoRF SequenceStartStop




1) FRLGLRY
2) HLEKPSEQPEES
3) SDPQPWNSESL
285
771
752
291
782
762