<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16755

Description Uncharacterized protein
SequenceMKSPPTRLFQDAATNSEKQITGLGAVIRDESGMQHSRSEIFRVISEIQNLLKGFDHRAAYISQLEDNLADLQTQLNKLIEAKNDELTRMICLVEEPAGIVGLYGMGGVGKTTLLTHINNKFFVSSTDFDCVIWIVVSKDLQLEKIQEIIGKKVGLLDGDSWKNKNSEEKALEIFRFLSLFVCGLVEANKNFKVECLSDNDAWELLRQKVGLETLDSHHDILELAQTVAKKCVGLPLALITIGRAIACKRTPREWRYAIQVLRTSAYEFSGSGKDVNPLLKFSYDCLPNDTIRSCLLYCTYNPNSLYPEDYLISKEILIYCWIGEGFLDESVRFGEQNQGYYILGILLHACLLEEGGDNEVKMHEVIRDMAVFMNSPQSLLYMCKSLKLVKELNQLIPILQSNAEMGISRGNPLSTQNVMTSRQKGVAGLDPSDWRNQLSHESRRRIVNKIMDTLKRHLPFSSPEGLNELKNMAGRFEEKIYTSATSQLDYLPENILLKMLSMGVQGNILQISISCDGAIFNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARVVNAERQPMMTRLNKVQGWLSRVDAVKAEADELIRHGSQEIEKLCLGGYCSKNCHSSYKLGKQVAKKLRDVGTLMAEGAFEVVAERAPESVADERPIEPTVVGLQSQLEQVWRCLEEKSVGIVGLYGMGGVGKTTLLTQINNKFLESPTNFNYVIWVVVSKDLRLENLQETIGEKIGLLNGGWKNRRIEQKALDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGLMEAHKKFKVACLSDIDAWELFRQKVGEEALHSHPDIVELAHTVAKECGGLPLALITTGRAMACKKTPEEWTYAIEVLSTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCLLYCSLYPKDYCISKENLIDCWIGEGFLTERDRFGEQNQGYHILGILLHACVLEEGGDGEVKMHDVIRDMALWIACDIEKEKENFLVYAGFGFIEAPPVRGWKRARRLSLMHTRITNLSNIPTCPHLLTLFLNKSNLSMIHDDFFQFMPSLKVLNLSYSKLTDLPVGISKLASLQLLDLSELNISELPEELKALVNLKCLNLEWTRYLISIPRQLISNLSRLHVLRMFGASHNAFDKASEDSILFGGGELVVEELLGLKYLEVTSFNLRSSPALQSFLSSHKLRCCTQALLLQHFKDSTFLEVSALADLKKLNRLWIRECEKLEQLKMDYTEEVQPFVFHSLKNVGICGCYKLKDLTFLVFAPNLESIEVTSCRDMEEIVSMGKFAEVPEVMANLNPFAKLQNLELTGVINLKSIYWKPLPFPHLKSMSFLNCHKLKKLPLDSNSARERNIVIYGDGRWWEQLEWVDEATRNAFLPCFKS
Length1397
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.118
Instability index50.58
Isoelectric point6.10
Molecular weight157960.12
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ADP binding	GO:0043531	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16755
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     457.87|      87|     582|      91|     177|       1
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   91-  177 (161.03/120.18)	CLVEEPAGIVGLYGMG...................G...................VGKTTLLTHINNKFFVSSTDFDCVIWIVVSKDLQLEKIQEIIGKKVGL.LD....GDSWKNKNSEEK...ALEIFRFL
  178-  264 (76.85/52.82)	SLF.....VCGLVEAN...................KnfkveclsdndawellrqkVGLETLDSH.....................HDI.LELAQTVAKKCVGLpLAlitiGRAIACKRTPREwryAIQVLRTS
  675-  760 (155.47/115.74)	CLEEKSVGIVGLYGMG...................G...................VGKTTLLTQINNKFLESPTNFNYVIWVVVSKDLRLENLQETIGEKIGL.LN....G.GWKNRRIEQK...ALDIFRIL
  804-  887 (64.52/42.95)	........VCGLMEAHkkfkvaclsdidawelfrqK...................VGEEALHSH.....................PDI.VELAHTVAKECGGLpLAlittGRAMACKKTPEEwtyAIEVLSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     212.44|      31|      54|     266|     296|       2
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  266-  296 (59.14/26.30)	YEFSGSGKDVNPLLKF.....SYDCLPNDTIRSCLL
  319-  352 (52.37/22.61)	YCWIGEGF.LDESVRFgeqnqGYYIL.GILLHACLL
  891-  919 (49.86/21.25)	..FPGLGNEVYPLLKF.....SYDSLPSDTIRSCLL
  937-  970 (51.07/21.91)	DCWIGEGF.LTERDRFgeqnqGYHIL.GILLHACVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     100.88|      14|      21|    1259|    1272|       3
---------------------------------------------------------------------------
 1229- 1242 (22.14/10.69)	LNRLWIRECEKLEQ
 1259- 1272 (24.25/12.41)	LKNVGICGCYKLKD
 1282- 1295 (19.44/ 8.50)	LESIEVTSCRDMEE
 1318- 1331 (18.59/ 7.81)	LQNLELTGVINLKS
 1342- 1354 (16.46/ 6.07)	LKSMSFLNCHKLK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.09|      43|     616|     297|     373|       4
---------------------------------------------------------------------------
  297-  373 (65.10/56.45)	YCtynpnSLYPEDYLISKEILIycwigegfldesvrfGEQNQgyyilgillhacllEEGGDNEVKMHEVIRDMAVFM
  920-  991 (74.00/50.22)	YC.....SLYPKDYCISKENLIdcwigegflterdrfGEQNQgyhilgillhacvlEEGGDGEVKMHDVIRDMALWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     226.85|      46|      46|    1049|    1094|       5
---------------------------------------------------------------------------
  998- 1047 (48.13/20.72)	.EKENF.LVYAGFgFIE.........APPVRgwkrarRLSLMHTR.ITNLS.N.IPTCPHLLTL
 1049- 1094 (71.19/33.51)	LNKSNLSMIHDDF.FQF.........MPSLK......VLNLSYSK.LTDLPVG.ISKLASLQLL
 1096- 1142 (58.02/26.20)	LSELNISELPEE..LKA.........LVNLK......CLNLEWTRyLISIPRQlISNLSRLHVL
 1147- 1200 (49.51/21.48)	ASHNAFDKASEDS.ILFgggelvveeLLGLK......YLEVTSFN.LRSSPAL.QSFLSSHKL.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.45|      17|     621|     191|     207|       6
---------------------------------------------------------------------------
  191-  207 (36.15/27.93)	FKVECLSDNDAWELLRQ
  814-  830 (36.31/28.09)	FKVACLSDIDAWELFRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16755 with Med15 domain of Kingdom Viridiplantae
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