<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16755

Description Uncharacterized protein
SequenceMKSPPTRLFQDAATNSEKQITGLGAVIRDESGMQHSRSEIFRVISEIQNLLKGFDHRAAYISQLEDNLADLQTQLNKLIEAKNDELTRMICLVEEPAGIVGLYGMGGVGKTTLLTHINNKFFVSSTDFDCVIWIVVSKDLQLEKIQEIIGKKVGLLDGDSWKNKNSEEKALEIFRFLSLFVCGLVEANKNFKVECLSDNDAWELLRQKVGLETLDSHHDILELAQTVAKKCVGLPLALITIGRAIACKRTPREWRYAIQVLRTSAYEFSGSGKDVNPLLKFSYDCLPNDTIRSCLLYCTYNPNSLYPEDYLISKEILIYCWIGEGFLDESVRFGEQNQGYYILGILLHACLLEEGGDNEVKMHEVIRDMAVFMNSPQSLLYMCKSLKLVKELNQLIPILQSNAEMGISRGNPLSTQNVMTSRQKGVAGLDPSDWRNQLSHESRRRIVNKIMDTLKRHLPFSSPEGLNELKNMAGRFEEKIYTSATSQLDYLPENILLKMLSMGVQGNILQISISCDGAIFNRCLDCFLGKAAYIRNLQENVIALETELVKLIEAKNDVMARVVNAERQPMMTRLNKVQGWLSRVDAVKAEADELIRHGSQEIEKLCLGGYCSKNCHSSYKLGKQVAKKLRDVGTLMAEGAFEVVAERAPESVADERPIEPTVVGLQSQLEQVWRCLEEKSVGIVGLYGMGGVGKTTLLTQINNKFLESPTNFNYVIWVVVSKDLRLENLQETIGEKIGLLNGGWKNRRIEQKALDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGLMEAHKKFKVACLSDIDAWELFRQKVGEEALHSHPDIVELAHTVAKECGGLPLALITTGRAMACKKTPEEWTYAIEVLSTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCLLYCSLYPKDYCISKENLIDCWIGEGFLTERDRFGEQNQGYHILGILLHACVLEEGGDGEVKMHDVIRDMALWIACDIEKEKENFLVYAGFGFIEAPPVRGWKRARRLSLMHTRITNLSNIPTCPHLLTLFLNKSNLSMIHDDFFQFMPSLKVLNLSYSKLTDLPVGISKLASLQLLDLSELNISELPEELKALVNLKCLNLEWTRYLISIPRQLISNLSRLHVLRMFGASHNAFDKASEDSILFGGGELVVEELLGLKYLEVTSFNLRSSPALQSFLSSHKLRCCTQALLLQHFKDSTFLEVSALADLKKLNRLWIRECEKLEQLKMDYTEEVQPFVFHSLKNVGICGCYKLKDLTFLVFAPNLESIEVTSCRDMEEIVSMGKFAEVPEVMANLNPFAKLQNLELTGVINLKSIYWKPLPFPHLKSMSFLNCHKLKKLPLDSNSARERNIVIYGDGRWWEQLEWVDEATRNAFLPCFKS
Length1397
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.118
Instability index50.58
Isoelectric point6.10
Molecular weight157960.12
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ADP binding	GO:0043531	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16755
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     457.87|      87|     582|      91|     177|       1
---------------------------------------------------------------------------
   91-  177 (161.03/120.18)	CLVEEPAGIVGLYGMG...................G...................VGKTTLLTHINNKFFVSSTDFDCVIWIVVSKDLQLEKIQEIIGKKVGL.LD....GDSWKNKNSEEK...ALEIFRFL
  178-  264 (76.85/52.82)	SLF.....VCGLVEAN...................KnfkveclsdndawellrqkVGLETLDSH.....................HDI.LELAQTVAKKCVGLpLAlitiGRAIACKRTPREwryAIQVLRTS
  675-  760 (155.47/115.74)	CLEEKSVGIVGLYGMG...................G...................VGKTTLLTQINNKFLESPTNFNYVIWVVVSKDLRLENLQETIGEKIGL.LN....G.GWKNRRIEQK...ALDIFRIL
  804-  887 (64.52/42.95)	........VCGLMEAHkkfkvaclsdidawelfrqK...................VGEEALHSH.....................PDI.VELAHTVAKECGGLpLAlittGRAMACKKTPEEwtyAIEVLSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     212.44|      31|      54|     266|     296|       2
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  266-  296 (59.14/26.30)	YEFSGSGKDVNPLLKF.....SYDCLPNDTIRSCLL
  319-  352 (52.37/22.61)	YCWIGEGF.LDESVRFgeqnqGYYIL.GILLHACLL
  891-  919 (49.86/21.25)	..FPGLGNEVYPLLKF.....SYDSLPSDTIRSCLL
  937-  970 (51.07/21.91)	DCWIGEGF.LTERDRFgeqnqGYHIL.GILLHACVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     100.88|      14|      21|    1259|    1272|       3
---------------------------------------------------------------------------
 1229- 1242 (22.14/10.69)	LNRLWIRECEKLEQ
 1259- 1272 (24.25/12.41)	LKNVGICGCYKLKD
 1282- 1295 (19.44/ 8.50)	LESIEVTSCRDMEE
 1318- 1331 (18.59/ 7.81)	LQNLELTGVINLKS
 1342- 1354 (16.46/ 6.07)	LKSMSFLNCHKLK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.09|      43|     616|     297|     373|       4
---------------------------------------------------------------------------
  297-  373 (65.10/56.45)	YCtynpnSLYPEDYLISKEILIycwigegfldesvrfGEQNQgyyilgillhacllEEGGDNEVKMHEVIRDMAVFM
  920-  991 (74.00/50.22)	YC.....SLYPKDYCISKENLIdcwigegflterdrfGEQNQgyhilgillhacvlEEGGDGEVKMHDVIRDMALWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     226.85|      46|      46|    1049|    1094|       5
---------------------------------------------------------------------------
  998- 1047 (48.13/20.72)	.EKENF.LVYAGFgFIE.........APPVRgwkrarRLSLMHTR.ITNLS.N.IPTCPHLLTL
 1049- 1094 (71.19/33.51)	LNKSNLSMIHDDF.FQF.........MPSLK......VLNLSYSK.LTDLPVG.ISKLASLQLL
 1096- 1142 (58.02/26.20)	LSELNISELPEE..LKA.........LVNLK......CLNLEWTRyLISIPRQlISNLSRLHVL
 1147- 1200 (49.51/21.48)	ASHNAFDKASEDS.ILFgggelvveeLLGLK......YLEVTSFN.LRSSPAL.QSFLSSHKL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.45|      17|     621|     191|     207|       6
---------------------------------------------------------------------------
  191-  207 (36.15/27.93)	FKVECLSDNDAWELLRQ
  814-  830 (36.31/28.09)	FKVACLSDIDAWELFRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16755 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA