<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16753

Description Uncharacterized protein
SequenceMDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDWQEEVYQKIKTMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLERIITFLQVSKSNILPGFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVSMQQNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINPLQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFSISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSGTPLQPVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTTSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPRIEANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA
Length1012
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.03
Grand average of hydropathy-0.701
Instability index62.87
Isoelectric point9.02
Molecular weight110961.27
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16753
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     448.03|      52|      52|     357|     408|       1
---------------------------------------------------------------------------
   78-  134 (54.96/13.19)	.PQSNvsglQQQP....QQ.QLL..GT.QS..GNSSM.QTNQhpAHML...Q..QP......KV...PVQ.QQM...QQSAPNLLPN
  142-  167 (44.93/ 9.33)	QPQQQ....QMMS....QI.QS...................Q..PTQL...Q............................QQLGLQQ
  168-  229 (50.91/11.63)	QPNPL....QRDM....Q..QRL..QA.SGqaSASLL.QPQN..VMDQ...Q..KQlyqpqrAL...PET.SSTsldSTHQTGQANG
  357-  408 (87.82/25.83)	QPHDN....QMNS....QI.QSM..NL.AG..SMVSM.QQNN..VTNV...Q..HN......SV...PSV.SGV...STSQQNMLNS
  410-  465 (55.86/13.53)	QPGPN.....MDSgqgtSL.SSM..HQ.VN..AG.SL.QQNS..VSAP...Q..QA......SInnlPSQ.SGV...NMLQSN.INP
  467-  518 (65.78/17.35)	QSNSN....MM......QH.QHL..KQ.HQ..EQQIL.QSQQ..LKQM...QqrHM......QF...QKQ.QLM...QQQQQQQHQQ
  519-  580 (36.69/ 6.16)	QQHQQ....QQHQ....QAkQQLpaQLpTH..QMPQLnQMND..VNDLkirQ..GM......AV..kPGVfQQH...LTSGQRSAYS
  582-  621 (51.07/11.69)	QPLK........................PG..AQFSI.SSPQ..LLQT...A..SP......QI...PQH.SSP...QVDQQNLLQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.79|      17|      17|     234|     250|       2
---------------------------------------------------------------------------
  234-  250 (30.52/18.54)	EEVYQKI..KTMKEMYLPE
  252-  270 (25.27/14.12)	NEMYQKIaaKLQQHDSLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.53|      19|      19|       1|      19|       3
---------------------------------------------------------------------------
    1-   17 (28.79/16.55)	..MDTN.NWRP.TPPVGESNL
   18-   34 (16.63/ 6.07)	DT....gDWRTqLQPDSRQRI
   37-   54 (31.12/18.56)	KIMDTL.K.RH.LPFSGQDGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.41|      14|      18|     622|     635|       4
---------------------------------------------------------------------------
  622-  635 (25.25/10.17)	ITKSGTPLQPVNSP
  638-  651 (28.15/12.15)	VPSPSTPMAPSPMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.67|      43|      65|     741|     785|       6
---------------------------------------------------------------------------
  685-  719 (21.97/ 7.75)	....................L............AIGTPGisaspllaefTGPDGAHGN...ALTAISIKA
  741-  785 (68.70/47.12)	LSASVSDIGSvvSMID...RI............AGSAPG..........NGSRAAVGEDLVAMTKCRLQA
  809-  848 (48.60/27.25)	LSV.VSSAG...SMNDsfkQL............TGSETS..........DLESTATS....SIKRPRIEA
  852-  898 (47.40/26.41)	LLEEIREINQ..RLID...TVvdisdedadptaAGSA.G..........EG.....GEGTV..VKCSFSA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16753 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVSMQQNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINPLQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFSISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSG
2) MDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDW
3) PLQPVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTTSAQAAAPSLA
320
1
628
626
232
686










Molecular Recognition Features






MoRF SequenceStartStop




1) RKMRRY
798
803