<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16744

Description ATP-dependent DNA helicase
SequenceMETEEILQELENVEAEVRLVQEQIKQLVDRQDQLYERQSELKSLLEAFEASRGSPIQYGGSSSTAVENWSGTFEWDSRADDARLNVFGIPAYRANQREIINAVLSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMCLAALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKMLYVTPEKISKSKRFMSKLEKCHRAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPMMALTATATQKVQNDLMEMLHIRKCIKFVSTINRPNLFYMVREKSSVGKVVIDEIAKYIQESYPNSESGIVYCFSRKECEQVAQELRQRGISADYYHADMDINAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSVETYYQESGRAGRDGLPSECLLFFRPADVRLSSTPQNFIIYAQVFLYLLVVTLVSEQSSMVFYENSGLQNLYDIVRYSQSKKQCRRSTFFRHFAEPLQDCNGMCDICAFSYEVSEVDVTRHAQCIISLLQDIQDNNQRLTMLQLVDKMKIKLKEIDSDLKREEIEQLVLQLIIDRVLSEEFQHTAYSTNAYVTIGLLAKLVLQGKKIIKLEISSVQKNTADNKKSTKRSLTSSALEFELDELRKELASISGGILPHSLEKIIGKLKTGKYGSRILEVISKCGNSVQQHDNNAVSKEEQGRDARASKRTKKEKAVVLVDSSDDSEV
Length720
PositionUnknown
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.300
Instability index42.80
Isoelectric point6.93
Molecular weight81525.60
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16744
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.28|      37|      64|      84|     126|       1
---------------------------------------------------------------------------
   84-  126 (59.04/56.45)	LNVFGIPAYranqreIINAVLSGRDVLVIMAA...GGGK.SLCYQLP
  151-  191 (55.24/38.96)	LAALGIPAH......MLTSTTSKEDEKFIYKAlekGEGElKMLYVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.36|      29|      69|     599|     628|       3
---------------------------------------------------------------------------
  599-  628 (42.71/31.20)	GKKIIKLeIS....SVQK..NTADNKKSTKRSLTSS
  666-  700 (37.66/22.60)	GSRILEV.ISkcgnSVQQhdNNAVSKEEQGRDARAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.93|      52|      69|     281|     334|       5
---------------------------------------------------------------------------
  281-  334 (79.85/70.76)	INRPNLFYMVREKSSVgKVVIDEIAKYIQESYPNSESGIVYCFSrKECEQVAQE
  351-  402 (89.08/67.66)	INAREKVHMRWSKNKL.QVIVGTVAFGMGINKPDVRFVIHHSLS.KSVETYYQE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16744 with Med34 domain of Kingdom Viridiplantae
Unable to open file!