<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16741

Description Uncharacterized protein
SequenceMDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISLVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYEMISEAVIDRIVELLKLTNSGLMMLDPVEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPTLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPITSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLIGRAAESLHPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS
Length1619
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.050
Instability index47.52
Isoelectric point6.53
Molecular weight181588.77
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16741
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.87|      34|     101|    1246|    1286|       1
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 1246- 1286 (45.78/46.56)	SKSGSTMDaSLRAPHNkSPitSQSG...PSNVSegrKEFYQNQD
 1350- 1386 (58.08/33.40)	SPSGGSTD.SLGASRS.TP..SVSGintSSFVS...RSGYTCQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.69|      11|     247|     958|     968|       2
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  958-  968 (23.39/15.72)	KTYLSHSFPQH
 1202- 1212 (23.30/15.63)	KIPFSESFPQH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     454.26|     148|     194|     173|     340|       3
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  173-  340 (222.73/192.95)	MLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIeTSVCAAMSPVKSSDVSCTGQQFT...TRVNSSVRdNAISSL..RQLCCKIILtglefsLKPV........THADIF.YHMLNWLVTwDQKQQGIDESDGKSWRLDKALIE.WLhsclDviWLLVDEdrcrvPFYELLRTG.LQFIE
  368-  531 (231.52/147.18)	MLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPI.TYPSVLGEPLHGEDLATSIQRGSldwERAMRCIR.HAIRATpsPDWWKRVLL......VAPCyrnpaqgpTPGAVFtYEMISEAVI.DRIVELLKLTNSGLMMLDPVEVNcWH....D..WLIFSD.....VFFFLVKSGcIDFVD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.57|      28|     541|     999|    1026|       4
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  999- 1026 (50.94/35.55)	FSPEEV.TSNIYTMVDVLLHHIHVELQRG
 1536- 1564 (47.62/32.72)	LPPAPVeASEIADLIDFLHHVVHYEGQGG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.04|      35|     349|     761|     795|       5
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  761-  795 (58.96/33.33)	LFRSLFSHLA..QRNPTLLAKVGVTPL.VLEIVNYRLL
 1109- 1146 (51.09/27.96)	LQKALGNHLSwkERYPTFFDDIAARLLpVIPLIVYRLI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.79|      41|     269|     533|     591|       6
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  533-  591 (53.28/82.35)	VDKLVS..RLQDGDNHILRtnhvtwlLAQIIRVELVMgalnsdsrkveTTRKILSFHREDR
  811-  853 (64.51/48.77)	ITKIISalKVKRGDHRVLR.......LAENLCMNLIL...........SQRDFFSLKREGK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     334.70|     114|     793|     600|     737|      10
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  600-  737 (164.55/166.08)	SILLdfISSCqNLRIWSLNTS..TREYLNNEQLqkgkqIDE.WWrqVSKGDRMMDYMnmdDRSVGM.....FWVvsytmAQPACETVMNWLsSAGVTELFpgSNLPPN...................erlMVMREVNPLPMSLLTGFSL.NLCLKLALQMEDSIFG
 1388- 1532 (170.15/107.44)	SCLL..IQAC.GLLLAQLPPDfhMQLYMEASRI.....IKEsWW..LADGKRSLGEL...DSAVGYalldpTWA.....AQDNTSTAIGNI.VALLHSFF..SNLPQEwlegthviikhlrpitsvamlrIVFRIMGPLLPRLVNAHTLfNKTLALLLNTMGDVYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.68|      16|     269|     908|     923|      11
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  908-  923 (29.48/18.51)	LRYFPSLLRDALIGRI
 1179- 1194 (30.20/19.17)	LAYFYGHLPGKLIVRI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.26|      31|    1186|     126|     161|      12
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  126-  161 (41.67/40.96)	SLCSIgYINwdtFLPSLLSSVS...SAEMSAGQGSqAMP
 1315- 1348 (48.58/27.57)	SLVQI.VVN...IQPTLIQTSNgpyGASNSVGQGS.VLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16741 with Med23 domain of Kingdom Viridiplantae
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