<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16739

Description Uncharacterized protein
SequenceMSVTASAKITSVAVAVNGGSGVGGGNGSRRAVRWAVENLMPNADRFILVHVMTAITSIPTPSGECIPLAEIDENVVKVYKEDVKLRTEEIFDPYKKLCKSKKMEKLVLEDDNPATALVKYVSEAGINNLVLGSCSTYCIMRKLKGQGVPTTVLKCAPKSCNIYVVSRHKVITNSANTKSTSVTSTRPQMLAPQDFGESSCGFNEQSSDLYTSSVEARDDKNFGPSFTSEISYPNSYAVARICSSTNGSVDVKSNCQNSGDSLETNSLERYNSTASTKSEQLAVLTEMEQLQLELQATVSMYKRACEELVHAQNKVHTLSHECLEERRRVNAALERNETLRKIASEAKEKHLQALKEVEDAKHFLVKEAYDRKIAELNVLKESLEKQKIVDALLLNDGRYRRYTRDEIEVATDFFSEFYIIGEGGYGKVYKCSLDHTPVAVKVVSPDAVNKEDEFLKEVEVLSQIRHPHVVLLLGACPEINCLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAIKNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADACVKLESSNVYAPSHFFCPILQEVMEDPYIAADGFTYEHRAIKAWLEKHNVSPVTKLRLQHLSIIPNYTLRSAIQQWRSPVTSL
Length769
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.242
Instability index45.51
Isoelectric point6.02
Molecular weight85849.12
Publications
PubMed=29259619

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16739
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.35|      12|      30|     726|     742|       1
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  726-  742 (17.13/24.37)	AIKAWlekhnVSPVTKL
  758-  769 (24.22/16.46)	AIQQW.....RSPVTSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.54|      19|      30|     397|     415|       2
---------------------------------------------------------------------------
  397-  415 (33.16/18.83)	GRYRRYTRDEIEVATDFFS
  426-  444 (32.38/18.25)	GKVYKCSLDHTPVAVKVVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.16|      30|      33|     628|     660|       3
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  628-  660 (44.10/45.62)	KNGSFADiLDKSItdWP.LAETEEL..ACIALKCSN
  662-  694 (44.06/32.29)	RCRDRPD.LDTEV..MPvLRKLKDVadACVKLESSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.13|      34|      35|     498|     532|       4
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  498-  532 (58.38/44.92)	HQNGKPALPWFVRfQIIFEVA.CGLA.FLHNSKPEPI
  534-  569 (45.75/29.38)	HRDLKPGNILLDR.NYVSKIGdVGLAkLISDAIPDNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.90|      16|     223|     254|     270|       5
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  254-  270 (25.93/26.08)	NCQnSGDSLETNSLERY
  480-  495 (30.98/24.69)	NCL.VYEYLENGSLEDY
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.56|      34|      34|     316|     349|       6
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  284-  306 (26.48/13.80)	............LTEMEQ..LQLELQATVSMYKRACE
  311-  345 (50.04/32.12)	AQNKvHTLSHECLEERRR..VNAALERNETLRKIASE
  346-  371 (23.04/11.12)	AKEK.HLQALKEVEDAKHflVKEAYDR..........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16739 with Med32 domain of Kingdom Viridiplantae
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