<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16732

Description Uncharacterized protein
SequenceMAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTPISFPSSVVKAPSSADISSSTVEVIASSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGVPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKVQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESRMFDI
Length1033
PositionUnknown
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.987
Instability index55.98
Isoelectric point6.64
Molecular weight116587.80
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16732
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.18|      39|      40|     231|     269|       1
---------------------------------------------------------------------------
  231-  269 (78.25/45.10)	TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD
  272-  310 (76.94/44.23)	TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     548.38|      66|      66|     547|     612|       2
---------------------------------------------------------------------------
  480-  546 (74.81/46.69)	EAKN..AFKALL.ESA...NV...GSDWTWDQALRAIINDRRYGALR.......TLGE...RKTAFNEYLGQKKKQdaE..ERRLKLK
  547-  612 (106.10/69.71)	KARD..DYKKMLEESV...EL...TSSTRWSKAVTMFENDERFKALE.......RERD...RKDMFDDHLDELKQK..E..RAKVQEE
  613-  681 (81.85/51.87)	RKRNiiEYRKFLESCD...FI...KANTQWRKVQDRLEADERCSRLD.......K.MD...RLEIFQEYLNDLEKE..EeeQRKIQKE
  689-  756 (70.82/43.76)	KNRD..EFRKLMEADValgTL...TAKTNWRDYCIKVKDSPPYMAVA.......SNTSgstPKDLFEDVVEEL.QK.......QFQED
  758-  820 (43.37/23.57)	.........TRIKDAV...KLrkiTLSSTW....T.FE.DFKASVLEdatsppiSDVN...LKLIFDDLLIKVKEK..E..EKEAKKR
  822-  881 (70.04/43.18)	RLED..EFFDLLCSVK...EI...SATSTWENCRQLLEGSQEFSSIG.......DESI...CRGVFDEFVTQL..K..E..QAK....
  882-  917 (41.57/22.24)	...D..YERKRKEE........................KAKREKERE........ERD...RR.....KLKQGRDK..E..RAR...E
  919-  972 (59.83/35.67)	EKED..HSKKDGADSD...HD...DSAENDSKR.SGKDND......K.......KHRK...RHQSAHDSLDE.NEK..D..RSK....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     244.57|      30|      31|      74|     103|       3
---------------------------------------------------------------------------
   16-   35 (32.65/13.91)	.........PHQ..PPM.........VGS..MDP.P.R.GFGPP......I
   36-   61 (36.92/16.72)	P....SQyrPLV..PA.................PQP.Q.HYVPMASQHFQP
   74-  103 (65.06/35.31)	P....SQ..PLQ..PPF.........RPL..MHPLP.A.RPGPPAPSHVPP
  104-  121 (25.67/ 9.30)	P....PQ..VM......................SLPnA.QPS....NHIPP
  125-  153 (32.10/13.54)	P....RP..NVQalSSY.........PPG..LGGL..G.RP..VAASYTFA
  154-  193 (24.70/ 8.65)	P....SS..YGQ..PQLignvnigsqQPMsqMH.VP.SiSAGGQLGVSV.S
  194-  223 (27.46/10.48)	QstvsST..PVQ..PT..........DEQ..MAATT.A...SAPLPTLQP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.56|      39|      45|     319|     363|       4
---------------------------------------------------------------------------
  319-  363 (54.03/63.31)	SETSPN.....SQTPIsFPSSVVkapSSADISSSTVEVIAssP.VAVVPII
  366-  410 (57.53/43.43)	SETQPAlvsvpSTSPV.ITSSVV...ANADGVPKTVDAIA..PmIDVSSSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.86|      15|      16|     433|     448|       6
---------------------------------------------------------------------------
  433-  448 (21.26/18.46)	DLVgASDKVPPPVTEE
  452-  466 (23.60/14.28)	DAV.RGEKVSDALEEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16732 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESRMFDI
2) ASDLVGASDKVPPPVTEETRKDAVRGEKVSDAL
3) MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPG
4) QLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWK
880
431
1
161
1033
463
138
234










Molecular Recognition Features






MoRF SequenceStartStop




NANANA