<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16731

Description Uncharacterized protein (Fragment)
SequenceMAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTPISFPSSVVKAPSSADISSSTVEVIASSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGVPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKVQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESRFLIISIFLIFGSVCPLSTLTGLLWSSSRLQPQNSSSNLCISKRNTLSNVVSQKIRTLEVQKGYMFISSLDSETPFVLWEAEGTKEGVGWRLRMHRFLTLFITVFFMQSNSSLLLGFKTLLILPESTLSLALVNAKDLFNSCVLFDAVDLLNGNFEHLPDAKSFDSVTLSCCKLMALASHSEATTSGSLESGERVSSSKLNCMIPSGYKCDSQGCCCFHHWSSIFSTSFVFLK
Length1261
PositionUnknown
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.758
Instability index53.72
Isoelectric point6.97
Molecular weight141738.63
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16731
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     196.54|      39|      40|     231|     269|       1
---------------------------------------------------------------------------
  231-  269 (76.26/53.12)	TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD
  272-  310 (75.34/52.37)	TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAE
  317-  343 (44.94/27.77)	TQSE..TSP.......NSQTPISF...PSSVVKAPSSAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.03|      15|      15|     884|     898|       2
---------------------------------------------------------------------------
  884-  898 (24.08/12.70)	ERKRKEEKAKREKER
  900-  914 (21.68/10.61)	ERDRRKLKQGRDKER
  971-  985 (21.27/10.25)	SKNPHRHNSDRKKPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     494.42|      66|      66|     547|     612|       3
---------------------------------------------------------------------------
  467-  540 (65.89/34.38)	.TVEQE.......HfayankleAKN..AFK.ALL.ESA...NV...GSDWTWDQALRAIINDRRYGALR.......TLGE...RKTAFNEYLGQKKKQdaE..E
  541-  606 (101.40/56.83)	RRLKLK.......K........ARD..DYK.KMLEESV...EL...TSSTRWSKAVTMFENDERFKALE.......RERD...RKDMFDDHLDELKQK..E..R
  607-  675 (81.69/44.38)	AKVQEE.......R........KRNiiEYR.KFLESCD...FI...KANTQWRKVQDRLEADERCSRLD.......K.MD...RLEIFQEYLNDLEKE..EeeQ
  676-  751 (63.30/32.75)	RKIQKEelskterK........NRD..EFR.KLMEADValgTL...TAKTNWRDYCIKVKDSPPYMAVA.......SNTSgstPKDLFEDVVEEL.QK......
  752-  814 (42.42/19.55)	.QFQED........................kTRIKDAV...KLrkiTLSSTWT.....FE.DFKASVLEdatsppiSDVN...LKLIFDDLLIKVKEK..E..E
  815-  881 (75.79/40.65)	KEAKKR......kR........LED..EFF.DLLCSVK...EI...SATSTWENCRQLLEGSQEFSSIG.......DESI...CRGVFDEFVTQLKEQ..A..K
  915-  970 (63.94/33.15)	AR...E......rE........KED..HSK.KDGADSD...HD...DSAENDSKR.SGKDND......K.......KHRK...RHQSAHDSLDE.NEK..D..R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     199.31|      27|      30|       9|      35|       4
---------------------------------------------------------------------------
    9-   35 (56.15/28.98)	PYSGAQVP.H......QPPMVGSMDP.PRGFGPPI
   41-   68 (41.80/19.75)	PLVPAPQPqH......YVPMASQHFQ.PGGQGGLI
   72-   96 (36.54/16.37)	GFP.SQ.P.L......QPPFRPLMHPlPARPGPP.
  120-  146 (32.09/13.51)	PPSSLPRP.NvqalssYPPGLG.......GLGRPV
  149-  174 (32.74/13.92)	SYTFAPSS.Y.....gQPQLIGNVNI...GSQQPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.01|      30|      30|     370|     399|       5
---------------------------------------------------------------------------
  370-  399 (46.87/30.93)	PALVS....VPST.SPVITSSVVANADGVPKTVDA
  402-  431 (37.69/23.24)	P.MID....VSSSiGEAVTDNTVAEAKNNLSNMSA
  432-  462 (35.45/21.37)	SDLVGasdkVP....PPVTEETRKDAVRGEKVSDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16731 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLED
2) ASDLVGASDKVPPPVTEETRKDAVRGEKVSDAL
3) MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPG
4) QLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWK
880
431
1
161
1021
463
138
234










Molecular Recognition Features






MoRF SequenceStartStop




NANANA