<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16730

Description Uncharacterized protein
SequenceMANNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPPQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTNYASGLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIEDPTFGSSSYLSSIPYGQVFAKRADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIASSVAVSADGIQTTVDALTPMTSVSSSVGDAVTVNTDTETKNYSSNLSASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDRAREREKEDHSKKDGAESDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKKSRRHASTPESDNESRHKRHKRDHRNGSRKNGDHEELEDGEVGLEGEK
Length995
PositionUnknown
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.992
Instability index52.87
Isoelectric point6.41
Molecular weight111736.36
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
protein dimerization activity	GO:0046983	IEA:InterPro

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16730
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     301.90|      60|      65|     197|     256|       1
---------------------------------------------------------------------------
   84-  173 (50.35/29.04)	PNAQ...QSNhiasgsSLPQANVQAPTNyasglgglarpfsasytfapssygqpqgtvnvNTGNQY............QPMSQMHVPS....N....PAGGqlgvSISQSTST
  197-  252 (93.26/60.74)	.......KSA......EVAQTDWIEHTA................................ADGRRYYYNKRTRQSTWDKPLELMTPIE....D....PTFG....SSSYLSSI
  253-  316 (80.80/51.53)	PYGQvfaKRA......D.AASDWKEFTS................................PDGRKYYYNKVTKQSKWSIPDELKLARE....QaeraSTKG....TQSEAS..
  317-  375 (77.49/49.09)	PNLQ...TSN......SVPSSAVTASPN................................AD.....ISSSTVQVVASSPVSVVPIIAassiQ....PAMV....SASSASPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.71|      15|      16|     851|     865|       2
---------------------------------------------------------------------------
  851-  865 (23.12/11.29)	ERKRKEEKSKK...EKER
  867-  881 (23.47/11.59)	DRDRKKQKQGR...EKDR
  884-  900 (17.12/ 6.21)	ERE.KEDHSKKdgaESDH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     449.28|      64|      65|     463|     526|       3
---------------------------------------------------------------------------
  415-  455 (32.64/16.35)	.......................E....TKNYSSNLSA.SNVVAAAV....EVPAQ..ETEEMRK...............DAVtGEKIGD
  463-  526 (98.25/65.01)	GQEHLAYANKL.EAKNAFKALL.E....SANVGSDWSW.DQAMQAIIND.RRYGAL..KTLGERK...............QAF.NEYLGQ
  531-  594 (81.32/52.46)	EAEERRF..KLkKAREDYKKMLeE....SVELTSSTRW.SKAVTMFEND.ERFKAL..DRERDRR...............DLF.DDHLEE
  600-  632 (40.43/22.13)	STQWRKVQDRL.EA.........................DE..........RCSRL..EKI.DRL...............EIF.KEYI..
  646-  714 (65.16/40.47)	QKEVLRRAER..KNRDEFRKLL.EgdvaSGTLTAKTHWrDYCMK..VKDlHAYMAVasNTSGSTP...............KDL.FEDVAE
  715-  778 (51.46/30.31)	ELQKQYQEDKT.RIKDAVK..L.K....KISLSSTWTF.EDFKASILED................vtsppisdvniklvfDDL.LERVKE
  779-  842 (80.02/51.49)	KEEKEAKKRK..RLADDFFALLcS....IKEISASSAW.EDCIQLFEGS.REFSSI..GEESICR...............EIF.DEYVTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     101.09|      25|      26|     901|     925|       4
---------------------------------------------------------------------------
  901-  916 (19.37/ 7.62)	..............DDS.AEYENKRS..GKDSD
  917-  945 (29.39/16.08)	KKHRKRHHS....gQDSlDENEKDRSknSHRSD
  946-  965 (25.54/12.83)	RKKSRRHAS.......T.PESDNESR..HK...
  966-  994 (26.79/13.89)	.RHKRDHRNgsrknGDH.EELEDGEV..GLEGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.78|      20|      26|      23|      48|       5
---------------------------------------------------------------------------
   23-   48 (30.80/27.39)	QyvPvasqHFP......PAGQGVSVMNAGLPP
   52-   77 (39.97/20.23)	Q..P....QFPqlmhqlPARPGQPAPSHGPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.74|      15|      18|     379|     395|       7
---------------------------------------------------------------------------
  379-  395 (19.72/19.67)	SVAVS.ADGIqtTVDALT
  399-  414 (21.02/12.87)	SVSSSvGDAV..TVNTDT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16730 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDRAREREKEDHSKKDGAESDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKDRSKNSHRSDRKKSRRHASTPESDNESRHKRHKRDHRNGSRKNGDHEELEDGEVGLEGEK
2) MANNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPPQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTNYASG
3) PDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASP
4) YGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTNEQVAANTASTMASTFQ
843
1
293
131
995
112
334
195










Molecular Recognition Features






MoRF SequenceStartStop




1) LEDGEVGLEGEK
984
995