<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16729

Description Uncharacterized protein
SequenceMEVKDIVELPNSPALSVAVAVKGNKKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTASKQIPLNVIDSCASLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFNKNNMSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYSHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSSYRSMQTENQDWSDQASTTDVLTYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNGTFQRYRNLTWEEIESATLSFSENLRIGMGGYGTVYKGTFHHTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHGCLVYEYMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNSKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKEVADRARDTVPSVHPAPPNHFICPILKEVMNEPCVAADGYTYDRKAIEEWLQENDKSPITDFPLPNKNLLPNYTLLSAILDWKSK
Length822
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.443
Instability index49.29
Isoelectric point6.31
Molecular weight91796.10
Publications
PubMed=29259619

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16729
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.97|      13|      15|     210|     223|       1
---------------------------------------------------------------------------
  210-  223 (20.32/18.26)	SS..DTGcSNSSSSSH
  226-  240 (19.64/10.64)	SSqtDLG.SAVASYSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.20|      30|     142|      22|      53|       2
---------------------------------------------------------------------------
   22-   53 (47.60/45.09)	KGNKKSRYAVlwALEKFIP.EGINLFKLLHVRP
  167-  197 (50.60/38.54)	KNNMSSRISI..CVPSFCTvYGVEKGKLSSVRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.09|      39|     212|     564|     610|       3
---------------------------------------------------------------------------
  564-  610 (64.28/57.19)	FERYRI.AWevasalafLHNSKPKPIIHRDMKPGNILLDHNLVSKIGD
  779-  818 (64.81/42.09)	YDRKAIeEW........LQENDKSPITDFPLPNKNLLPNYTLLSAILD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.92|      14|      15|     404|     417|       4
---------------------------------------------------------------------------
  398-  414 (17.84/11.53)	LAKqekKKYETARREAE
  415-  431 (19.08/12.90)	CARasaEKEAAQRQEAE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16729 with Med32 domain of Kingdom Viridiplantae
Unable to open file!