<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16727

Description Uncharacterized protein
SequenceMSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVSRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQQLQQQQQQQQHQQMQSQLQHQQLSQLQQQQQQQQLPQLQQQIPQLQQQQQIPQLQQQSMPQLQQQQQLPQLQQQQQLPQMQQQQQLPQLQQQQQMVGSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
Length830
PositionUnknown
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.366
Instability index59.82
Isoelectric point8.65
Molecular weight88716.26
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16727
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.24|      14|      15|     756|     770|       1
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  731-  746 (25.88/ 6.74)	LPQL..QqqiPQLQQQQQ
  747-  763 (27.20/ 7.47)	IPQL.QQqsmPQLQQQQQ
  764-  781 (24.16/ 9.64)	LPQLqQQqqlPQMQQQQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     502.11|      86|      86|     366|     451|       2
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  224-  275 (73.38/26.41)	.ISENFMEAR.......AALS...............................RPGVANLAPNQNPV.KM.DIAPVTSVTGP.....A........PTSIPSVNGIN
  279-  356 (95.28/36.72)	ISVGNVPTAT..VKVEPSTVT........SMVNGPTFPHIpsvSR.....PASQGV.PSLQTSSPS.ST.SQEMITS.GDSvpevkPLVSG....MSQ.P....LR
  366-  451 (150.91/62.92)	NILNNLSQAR..QVMNNAALTGGTSIGLQSMGQTPMAMHM...SN.....MISSGMASSVPTSQPVFSS.AQSGITSIGGS.....GTLTG....TSQVPQNSGLN
  459-  531 (93.11/35.70)	NLSGN.SNPSisQPM..GTLQGGASMG.QSVG.....MSQ...GNhsggqMVQNG....ISMNQNMMSGlGPSGVSS..GT.....GTM.........IP.TPGMS
  532-  612 (89.44/33.97)	Q......QAQ..SGMQPLSVNNNTAVNMQLSQQTSSALHS...SQ.skyvKVWEGSLSGQRQGQPVFIT.KLEGYRSASAS.....ETLAAnwppTMQI.......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.44|      18|      18|     692|     709|       3
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  692-  709 (37.55/13.37)	SQ.QQQQLQQQQQQQQHQQ
  712-  730 (32.89/10.83)	SQlQHQQLSQLQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.65|      16|      17|     790|     805|       4
---------------------------------------------------------------------------
  790-  805 (32.24/15.78)	QMVGSGM..GQGYVQGPG
  808-  825 (25.42/10.67)	QLVSQGQvsSQGAPNIPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.85|      15|      50|     137|     151|       5
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  137-  151 (31.67/17.22)	PHPLP..TPVYRPQMQN
  188-  204 (21.18/ 9.11)	PKQLPklTAIYNAAKRN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.27|      11|      18|     651|     661|       8
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  651-  661 (19.65/11.02)	KLCAVIQL..PSQ
  670-  682 (16.62/ 8.16)	KACRLIGMlfPGD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16727 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
2) KVEPSTVTSMVNGPTFPHIPSVSRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLR
3) LSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTAT
4) QVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQT
793
290
235
376
830
356
288
557










Molecular Recognition Features






MoRF SequenceStartStop




NANANA