<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16720

Description Uncharacterized protein
SequenceMEESSGRTEMSRPREDPSEWKAKFTPDLRRKVVQKILDFIRMPPEARSQMTKVIEQFEEGLFRSAISQSSHSNAGVSSPSKPVLNQNSMVAVRGQSSSLKNVYQAPSKVAGDSVGQGMQSNISADNQRNGLGTRQDQHQQSQQQLLTHNVHQPNAGNLCIEDILSVHCYQQQQNIASQSNSFQFSQNQTLNTESQQPPFSEQSSTAVFQPNQLVPQGNNIGQQLSPFQKTMPNSYQQPDGLQSNASCLQQQHRVTGAELKVMNMKLHEHSAHILQVEDTSLPLKVEQSVQSVNNFHQLLYSPKQSKKETTHQRPDTLAAMVTPRIVNNQQNVLPAVKNMTEVSSETGAPSEQANMAEFHDQMYQKFQAMRKEYLPWLTHVYNKLNEKCQKFLHAFKKENSVSAQQCTQLQPSGGQSQMPQLNSALTGKPVGQSPLSSTQQVIPSSQPNMMNLPRSGSLFELEQQNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPATKLPLQNFVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQADNSHQMPLPTTPHHFQYPSQMSQHSSAQVYQKNLPLALSKLGTPSYSANSPSITSSPSIPFTPFSIPADSENHPSDISSLLISRNLGHPQRTLSLNLVDTENEIATQFLPVAQAGISASSFPTESSSPNYEQQSSAMKEPLERLLNAVQSLSPKTLSASVREIGSALKTVDAISGTACNDSGVDVDENLVSATTCCMHGRNFSLQSGCSSEAKMEDKTNPIALDETDSIKQSAGQIWDIDTSRIIKRRRVEGLICIDYSQPSNTLLDEIKCINQWLIETEIDLDSSEDPSALDAGEGTIVRCIYSAVALDENFKMQFASQILPLPLRLFVPASYPNASPVILGGLSFDWSGESIGSINLSEKTRSRFSLSLRKLSEPMSLAEMAMTWDICARTVLLEYALNQLMEGALAQNMENGRTALPLDQSHKPLV
Length999
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.05
Grand average of hydropathy-0.588
Instability index65.42
Isoelectric point6.29
Molecular weight110443.65
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP16720
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.51|      23|      23|     604|     626|       1
---------------------------------------------------------------------------
  604-  626 (38.93/19.27)	LPLALSKLGTPSYSANSPSITSS
  629-  649 (34.09/15.98)	IP..FTPFSIPADSENHPSDISS
  679-  697 (26.76/11.00)	LPVAQAGISASSFPTES....SS
  714-  736 (30.73/13.69)	LLNAVQSLSPKTLSASVREIGSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     575.25|      98|     124|     370|     467|       2
---------------------------------------------------------------------------
   50-  123 (94.50/41.66)	.................................MTKVIEQFEEGL..FR.SAISQSSHSNAGVSSPSKPVLNQNSMV......AVR................................................G......QS..SSLKNVYQA..PSKVA...GDSVGQGM...QSNIS
  124-  212 (116.04/52.97)	ADNQ..........................RNGLGTRQDQHQQSQQQLLtHNVHQPN..AGNLCIEDILSVHCYQQQ..Q.NIA...............................................SQSN......SFQFSQNQTLNTESQQPPFSEQSSTAVFQPN...Q....
  214-  333 (81.53/34.85)	..............................VP.......QGNNIGQQ.L.SPFQKTMPNSYQ.....QPDGLQSNASclQQQHRVTGaelkvmnmklhehsahilqvedtslplkveqsvqsvnnfhqllySP.K......QSKKETTHQR.PDTLAAMVT.PRIVN....N...QQNVL
  370-  467 (168.03/80.27)	RKEY..........................LPWLTHVYNKLNEKCQKFL.HAFKKENSVSAQQCTQLQPSGGQSQMP..QLNSALTG............................................KPVG......QSPLSSTQQVIPSSQPNMMNLPRSGSLFELE...QQNAS
  475-  596 (115.16/52.51)	RPE.ghdiggaqqikssngatgrsfypatkLPLQNFVKNAFPQQ.RQLK.HQMRQTENV..RQ..QMQPQFSQKKMQ..HMQMA.NI............................................KPVAtsdmlqQNPLIS.QQADNSHQ...MPLPTTPHHFQYPsqmSQHSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.75|      24|     329|       8|      31|       4
---------------------------------------------------------------------------
    8-   31 (44.92/27.93)	TEMSRPREDPSEWK..AKFTPDLRRK
  340-  365 (37.84/22.35)	TEVSSETGAPSEQAnmAEFHDQMYQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.25|      19|     121|     741|     759|       5
---------------------------------------------------------------------------
  741-  759 (35.34/23.43)	DAISGT..ACNDSGVDVDENL
  863-  883 (29.91/18.77)	DAGEGTivRCIYSAVALDENF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16720 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NQQNVLPAVKNMTEVSSETGAPSEQANMAEFHDQ
2) NVYQAPSKVAGDSVGQGMQSNISADNQRNGLGTRQDQHQQSQQQLLTHNVHQ
3) PLQNFVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQADNSHQMPLPTTPHHFQYPSQMSQH
4) SAQQCTQLQPSGGQSQMPQLNSALTGKPVGQSPLSSTQQVIPSSQPNMMNLPRSGSLFELEQQNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPAT
5) SNSFQFSQNQTLNTESQQPPFSEQSSTAVFQPNQLVPQGNNIGQQLSPFQKTMPNSYQQPDGLQSNASCLQ
328
101
505
402
179
361
152
594
502
249










Molecular Recognition Features






MoRF SequenceStartStop




1) PSEWKAKFTPDLRRKVVQKILDFIRMP
17
43