<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16718

Description Uncharacterized protein
SequenceMEESSGRTEMSRPREDPSEWKAKFTPDLRRKVVQKILDFIRMPPEARSQMTKVIEQFEEGLFRSAISQSSHSNAGVSSPSKPVLNQNSMVAVRGQSSSLKNVYQAPSKVAGDSVGQGMQSNISADNQRNGLGTRQDQHQQSQQQLLTHNVHQPNAGNLCIEDILSVHCYQQQQNIASQSNSFQFSQNQTLNTESQQPPFSEQSSTAVFQPNQLVPQGNNIGQQLSPFQKTMPNSYQQPDGLQSNASCLQQQHRVTGAELKVMNMKLHEHSAHILQVEDTSLPLKVEQSVQSVNNFHQLLYSPKQSKKETTHQRPDTLAAMVTPRIVNNQQNVLPAVKNMTEVSSVLSPVPSLETGAPSEQANMAEFHDQMYQKFQAMRKEYLPWLTHVYNKLNEKCQKFLHAFKKENSVSAQQCTQLQPSGGQSQMPQLNSALTGKPVGQSPLSSTQQVIPSSQPNMMNLPRSGSLFELEQQNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPATKLPLQNFVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQADNSHQMPLPTTPHHFQYPSQMSQHSSAQVYQKNLPLALSKLGTPSYSANSPSITSSPSIPFTPFSIPADSENHPSDISSLLISRNLGHPQRTLSLNLVDTENEIATQFLPVAQAGISASSFPTESSSPNYEQQSSAMKEPLERLLNAVQSLSPKTLSASVREIGSALKTVDAISGTACNDSGVDVDENLVSATTCCMHGRNFSLQSGCSSEAKMEDKTNPIALDETDSIKQSAGQIWDIDTSRIIKRRRVEGLICIDYSQPSNTLLDEIKCINQWLIETEIDLDSSEDPSALDAGEGTIVRCIYSAVALDENFKMQFASQILPLPLRLFVPASYPNASPVILGGLSFDWSGESIGSINLSEKTRSRFSLSLRKLSEPMSLAEMAMTWDICARTVLLEYALNQLMEGALAQNMENGRTALPLDQSHKPLV
Length1007
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.05
Grand average of hydropathy-0.572
Instability index65.80
Isoelectric point6.29
Molecular weight111236.61
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16718
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.07|      18|      21|     171|     188|       1
---------------------------------------------------------------------------
  142-  162 (21.74/ 6.77)	QQQllthNV.HQPNAGNLCIED
  171-  188 (32.23/13.46)	QQQ....NIASQSNSFQFSQNQ
  195-  212 (29.10/11.46)	QQP....PFSEQSSTAVFQPNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.89|      13|      21|     622|     634|       2
---------------------------------------------------------------------------
  622-  634 (24.56/11.93)	PSYSANSPSITSS
  645-  657 (25.33/12.52)	PADSENHPSDISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     240.81|      61|     122|     707|     767|       3
---------------------------------------------------------------------------
  707-  767 (97.74/64.33)	NYEQQSSAMKE.PLERLLNAV...QSLSPKTLSASVREIG.SALKTVDAISGT..ACNDSGVDVDENL
  779-  833 (56.65/34.09)	NFSLQSGCSSEaKMEDKTNPIaldETDSIKQSAGQIWDIDtSRIIKRRRVEGL..IC...........
  835-  891 (86.41/56.00)	DYSQPSNTLLD.EI.KCIN.....QWLIETEIDLDSSEDP.SAL...DAGEGTivRCIYSAVALDENF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.06|      21|      21|     407|     427|       4
---------------------------------------------------------------------------
  407-  427 (37.91/19.71)	NS.VSAQQCTQLQPSGGQSQMP
  430-  451 (30.14/13.94)	NSaLTGKPVGQSPLSSTQQVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.35|      12|      19|     523|     534|       6
---------------------------------------------------------------------------
  523-  534 (25.18/12.82)	PQQRQLKHQMRQ
  544-  555 (23.17/11.19)	PQFSQKKMQHMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.63|      28|      74|     214|     241|       7
---------------------------------------------------------------------------
  213-  240 (51.83/26.35)	LVPQGNNIGQQL................................................SPFQKTMPNSYQQPDG
  241-  316 (24.80/ 8.67)	LQSNASCLQQQHrvtgaelkvmnmklhehsahilqvedtslplkveqsvqsvnnfhqllySPKQSKKETTHQRPDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.69|      22|     127|     452|     475|      11
---------------------------------------------------------------------------
  453-  476 (30.75/27.54)	SQPNMMNlPRsGSLFELEQQNASS
  477-  498 (37.93/23.53)	SLQDAAR.PE.GHDIGGAQQIKSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.28|      12|      16|      83|      96|      12
---------------------------------------------------------------------------
   83-   96 (16.56/16.57)	VLNQNSMVAvrGQS
  102-  113 (21.72/13.54)	VYQAPSKVA..GDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.08|      17|      22|     561|     577|      15
---------------------------------------------------------------------------
  561-  577 (30.06/14.67)	PVATSDMLQQNP.LISQQ
  585-  602 (31.03/15.38)	PLPTTPHHFQYPsQMSQH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16718 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NVYQAPSKVAGDSVGQGMQSNISADNQRNGLGTRQDQHQQSQQQLLTHNVHQ
2) PLQNFVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQADNSHQMPLPTTPHHFQYPSQMSQH
3) SAQQCTQLQPSGGQSQMPQLNSALTGKPVGQSPLSSTQQVIPSSQPNMMNLPRSGSLFELEQQNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPAT
4) SNSFQFSQNQTLNTESQQPPFSEQSSTAVFQPNQLVPQGNNIGQQLSPFQKTMPNSYQQPDGLQSNASCLQ
101
513
410
179
152
602
510
249










Molecular Recognition Features






MoRF SequenceStartStop




1) PSEWKAKFTPDLRRKVVQKILDFIRMP
17
43