<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16717

Description Uncharacterized protein
SequenceMEESSGRTEMSRPREDPSEWKAKFTPDLRRKVVQKILDFIRMPPEARSQMTKVIEQFEEGLFRSAISQSSHSNAGVSSPSKPVRGQSSSLKNVYQAPSKVAGDSVGQGMQSNISADNQRNGLGTRQDQHQQSQQQLLTHNVHQPNAGNLCIEDILSVHCYQQQQNIASQSNSFQFSQNQTLNTESQQPPFSEQSSTAVFQPNQLVPQGNNIGQQLSPFQKTMPNSYQQPDGLQSNASCLQQQHRVTGAELKVMNMKLHEHSAHILQVEDTSLPLKVEQSVQSVNNFHQLLYSPKQSKKETTHQRPDTLAAMVTPRIVNNQQNVLPAVKNMTEVSSVLSPVPSLETGAPSEQANMAEFHDQMYQKNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPATKLPLQNFVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQADNSHQMPLPTTPHHFQYPSQMSQHSSAQVYQKNLPLALSKLGTPSYSANSPSITSSPSIPFTPFSIPADSENHPSDISSLLISRNLGHPQRTLSLNLVDTENEIATQFLPVAQAGISASSFPTESSSPNYEQQSSAMKEPLERLLNAVQSLSPKTLSASVREIGSALKTVDAISGTACNDSGVDVDENLVSATTCCMHGRNFSLQSGCSSEAKMEDKTNPIALDETDSIKQSAGQIWDIDTSRIIKRRRVEGLICIDYSQPSNTLLDEIKCINQWLIETEIDLDSSEDPSALDAGEGTIVRCIYSAVALDENFKMQFASQILPLPLRLFVPASYPNASPVILGGLSFDWSGESIGSINLSEKTRSRFSLSLRKLSEPMSLAEMAMTWDICARTVLLEYALNQLMEGALAQNMENGRTALPLDQSHKPLV
Length899
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.05
Grand average of hydropathy-0.568
Instability index66.85
Isoelectric point5.99
Molecular weight99160.95
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16717
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     406.58|      74|      74|     205|     278|       1
---------------------------------------------------------------------------
  102-  159 (46.56/15.32)	........GDSVGQ.GM......Q....SNISADNQR..........N.GLgtrQDQHQ..QSQQ...QllthnvHQP....NAG.NLCIEDI.LSV..HC................
  161-  204 (28.27/ 6.61)	......QQQQNIAS.QS.NS.F.QfsqnQTLNTESQQ.........PPfSE...QSSTA..VFQP...N........................QL......................
  205-  274 (116.40/48.58)	.....VPQGNNIGQ.QL.SP.F.Q....KTMPNSYQQ.........PD.GL...QSNAS..CLQQ...Q......HRV....TGA.ELKVMNMKLHE..HSAHILQVED...TSLPL
  275-  344 (74.56/28.66)	KVEQsVQSVNNFHQ.LLySP.K.Q....SKKETTHQR.........PD.TL...AAMVTprIVNN...Q......QNV....LPA....VKNMT..E..VSSVLSPVP.....SLE.
  346-  416 (57.06/20.32)	........GAPSEQaNM.AE.F.H....DQM...YQK.......naSS.SL...QDAAR....PE...G......HDI....GGAqQIKSSNGATGRsfYPATKLPLQNfvkNAFPQ
  419-  506 (83.72/33.02)	QLKHqMRQTENVRQ.QM.QPqFsQ....KKM..QHMQmanikpvatSD.ML...QQNPL..ISQQadnS......HQMplptTPH.HFQYPS.QMSQ..HSS..AQVYQ...KNLPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     215.75|      72|     108|     507|     614|       2
---------------------------------------------------------------------------
  507-  582 (110.56/107.21)	ALSKLGTPSYSANSPSITSS.PSIPFTPFSIPADSenhPSDISSLLISRNL..GHpQRTLSL.NLVDTENEIATQFLPVA
  617-  692 (105.19/46.55)	AVQSLSPKTLSASVREIGSAlKTVDAISGTACNDS...GVDVDENLVSATTccMH.GRNFSLqSGCSSEAKMEDKTNPIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.22|      14|      15|      26|      39|       4
---------------------------------------------------------------------------
   26-   39 (23.31/19.55)	PDLRRKVVQKILDF
   44-   57 (23.92/20.29)	PEARSQMTKVIEQF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16717 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQADNSHQMPLPTTPHHFQYPSQMSQH
2) NFHQLLYSPKQSKKETTHQRPDTLAAMVTPR
3) SAISQSSHSNAGVSSPSKPVRGQSSSLKNVYQAPSKVAGDSVGQGMQSNISADNQRNGLGTRQDQHQQSQQQLLTHNVHQ
4) SNSFQFSQNQTLNTESQQPPFSEQSSTAVFQPNQLVPQGNNIGQQLSPFQKTMPNSYQQPDGLQSNASCLQ
5) SSVLSPVPSLETGAPSEQANMAEFHDQMYQKNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPAT
409
285
64
170
334
494
315
143
240
402










Molecular Recognition Features






MoRF SequenceStartStop




1) PSEWKAKFTPDLRRKVVQKILDFIRMP
17
43