<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16716

Description Uncharacterized protein
SequenceMYIAPKIMVGLELYCVLFPSLHSLIHQAESPFIRSDQIMTSPAWLPPEVQQLTANAPISGKPVGGSLVASSTPIAPTSNGSDTATNDSISGPSQAKSVTATGGVIPQSSFSFQNSEGSGHSASSVSAGLSHFSHVINSNPSVPPGVSSFTYSASQTVVGYSPNQQFQPNMNKLEAVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLQPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSMRTAAATSHSAIPGHQLVGTSGNTEAPPSGTGTLRVYDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
Length1032
PositionUnknown
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.734
Instability index51.48
Isoelectric point8.42
Molecular weight113299.15
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16716
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     146.01|      35|      36|      78|     112|       1
---------------------------------------------------------------------------
   78-  112 (58.69/30.50)	SNGSDTATN............DSISGPSQAKSVTATGGVIPQ..SSFSF
  115-  151 (50.38/25.12)	SEGSGHSAS............SVSAGLSHFSHVINSNPSVPPgvSSFTY
  180-  226 (36.94/16.43)	GLGSSTSTNsqpvqasvrtfsDSTVATSSATALSTTTSWMPT.iPSFS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     414.42|      64|      64|     713|     776|       2
---------------------------------------------------------------------------
  636-  688 (59.87/32.58)	..............FKEMLK......erGVAPFSKWEKELPKIVFDPRFKA....IQSQSARRALFERY.VK..TRAEEE
  689-  758 (89.40/52.43)	RKekRAAQKAAIEGFKQLLE....evseDIDHSTDYQTFKKKWGSDPRFEA....LDRKDRELLLNERV.LPL.KRAAEE
  759-  824 (91.12/53.59)	KA..QAIRAAAASSFKSMLR.....ekgDITLSSRWSKVKDILRDDPRYKS....VRHEDREVIFNEYV.REL.K.AAEE
  825-  869 (54.02/28.65)	EA..ER.EAKARREEQEKL.........................KEREREM....RKRKEREEQEMERVrLKV.RR..KE
  870-  932 (59.62/32.42)	..........AVTSFQALLV....etikDPQAS..WTESRPKLEKDPQGRAtnadLDSSDREKLFREHI.KTLyERCAHD
  937-  994 (60.38/32.93)	LA..EVITAEAA........aqetedgkTVLNS..WSTAKRVLKPEPRYSK....MPRKEREALWRRHA.EEI.QR....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     438.18|     103|     104|     233|     336|       3
---------------------------------------------------------------------------
   19-   62 (38.32/12.09)	.......................................................................................PSL....HSLIHQAESPF....IRSDQiM.TSPAWLP...........PEVQQLTANAPISGKP
  233-  336 (181.14/86.63)	VTPQTQA.PPGLLTLRT.KD....TSSAFGDFYSSAGLR......P..................SVPTPSAPSNSGSaIQHQIYPTYPSL....PPIGVSPQGPL....LQPPQ.M.GVRPWLPFL.......PYPAAYPSPFPLPAHGMP
  340-  445 (123.97/55.10)	VS.QIDAqPPGLSSMRTaAA....TSHSAIPGHQLVGTS......G..................NTEAP..PSGTGT.LR..VYDKKEHVhdvsSRIGASVNEQLdawtAHKTD.T.GIVYYYNAV.......TGESTYEKPAGF..KGEP
  447-  572 (94.75/40.50)	KVPVQPT.PISMEHLTG.TDwalvTTNDGKKYYYNSKMKvsswqiPsevtelkkkedddtlkeqSVPNTNIVIEKGS...NAISLSSPAV....NTGGRDATA......LRTSS.MpGSSSALDLIkkklqdsGTPTASPAP.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.97|      23|     404|     596|     618|       4
---------------------------------------------------------------------------
  596-  618 (41.37/21.02)	QNE.NTKDKLKDINGDGTMSDSSS
 1002- 1025 (38.60/19.16)	QNEdNHKDSKSRSSTDGGRPPSSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16716 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASSTPIAPTSNGSDTATNDSISGPSQAKSV
2) EEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVR
3) EVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
4) FPLPAHGMPNPSVSQIDAQPPGLSSMRTAAATSHSAIPGHQLVGTSGNTEAPPSGTGTLRVYDKKEH
5) IPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECI
6) YSPNQQFQPNMNKLEAVEDAGLGSSTSTNSQPVQASVRTFS
69
823
939
328
489
160
98
862
1032
394
633
200










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
555
560