<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16711

Description Uncharacterized protein
SequenceMVVMLTAAFLVFSDYDLVFTHGFDGSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQLSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDVLKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
Length780
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.09
Grand average of hydropathy0.328
Instability index38.08
Isoelectric point8.02
Molecular weight83848.46
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16711
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.50|      36|      71|     133|     168|       1
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   79-  106 (29.20/12.96)	....VP....ADY...SGSEshLIGYAALLN..TLLVGISS
  133-  168 (67.80/38.81)	FGSSIPN...ASWTLSSGEE..FSCYAVFSNAFTILVRLWR
  204-  241 (56.50/31.25)	FGTS.PKdqmKSKRFSKNIK..FSTDPIFMDSFPKLKRWYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     250.74|      67|      77|     327|     393|       2
---------------------------------------------------------------------------
  245-  313 (36.32/15.52)	...................ECIASTLTGLVHGTSVHlIVDALLTKMFrkINRSGTPlTSATSGStnssgsgledvSIKlkvpaWDILE
  327-  393 (114.96/64.89)	AHGRLSPRELATGLKEL.SDCLPATLATVVSYFSAE.VTRGLWKPAF..MNGTDWP.SPATNLS...........SIE.....QQIKK
  406-  471 (99.45/55.15)	AVGGNSPATLPLPLAALvSLTITFKLDKASDRFLAL.VGLGL..SSL..ASSCPWP.CMPIVAS...........LWA.....QKVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.35|      10|     554|      48|      61|       5
---------------------------------------------------------------------------
   48-   61 (10.45/17.36)	AATVlcGASLVrgW
  607-  616 (19.90/ 9.70)	AASL..GASLV..W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.52|      30|     246|     488|     520|       6
---------------------------------------------------------------------------
  488-  520 (46.82/36.44)	NTDAVVQL...LKSCFTSTLGLTSshnYSNGGVGAL
  736-  768 (46.70/27.86)	NVDVLKRLskgLRQWDEEELALTL...LGVGGVGAM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16711 with Med33 domain of Kingdom Viridiplantae
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