<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16707

Description Uncharacterized protein
SequenceMVVMLTAAFLVFSDYDLVFSYNNLFPEASLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQLSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDVLKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
Length783
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.09
Grand average of hydropathy0.327
Instability index38.41
Isoelectric point8.02
Molecular weight84269.95
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16707
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.50|      36|      71|     136|     171|       1
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   82-  109 (29.20/16.11)	....VP....ADY...SGSEshLIGYAALLN..TLLVGISS
  136-  171 (67.80/48.33)	FGSSIPN...ASWTLSSGEE..FSCYAVFSNAFTILVRLWR
  207-  244 (56.50/38.90)	FGTS.PKdqmKSKRFSKNIK..FSTDPIFMDSFPKLKRWYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     250.74|      67|      77|     330|     396|       2
---------------------------------------------------------------------------
  248-  316 (36.32/15.79)	...................ECIASTLTGLVHGTSVHlIVDALLTKMFrkINRSGTPlTSATSGStnssgsgledvSIKlkvpaWDILE
  330-  396 (114.96/65.52)	AHGRLSPRELATGLKEL.SDCLPATLATVVSYFSAE.VTRGLWKPAF..MNGTDWP.SPATNLS...........SIE.....QQIKK
  409-  474 (99.45/55.71)	AVGGNSPATLPLPLAALvSLTITFKLDKASDRFLAL.VGLGL..SSL..ASSCPWP.CMPIVAS...........LWA.....QKVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.52|      30|     246|     491|     523|       6
---------------------------------------------------------------------------
  491-  523 (46.82/29.05)	NTDAVVQL...LKSCFTSTLGLTSshnYSNGGVGAL
  739-  771 (46.70/22.18)	NVDVLKRLskgLRQWDEEELALTL...LGVGGVGAM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16707 with Med33 domain of Kingdom Viridiplantae
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