<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16696

Description Uncharacterized protein
SequenceMRQCHDSPIIIPTCVTRTRTRTDSIIPSMEVLRPPPQHRPTHDPARFMLERKVAVPSQLPEIVEEEGGGEKVYVALGKCVEKGLSLLHWTLQRFGSSREICILHVHQPSPVIPTLLGKLPASQASAEVLSAFRAEERQKMKKLLDNYLRICVEAKVKARIITTEADKIQKAIVQLMNIHGIQKLVMGAFPDNCMKVKMGSRKASYAAKNAPMFCEIWFVNKGKHVWTKEASESPNSFLPFCGAETRSAKMLRSRSLENCNGTSLFNPESILSRSATTLTHVGITDWVQSDPVHMVFPSSPTISCSDMNLFSPRSSSTGSGYMSEKRESTDSDSKVEEDPLYVQHREVSIKAEELRNSAFAEFLKRKKLESEAMEAIGKVKAFESAYAREMHLQKEAEDALQTTIQDQEKLKQEKAFVTQELHRTMRNVALLNSRAQEANRRRDEATGELKLIQASIATLQQEKQRIRRQKVEAVRWLERWRSRGQAGAANYDGFIGLVEDLPESAEFSLADLQTATCNFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPVPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDWLCKS
Length863
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.348
Instability index55.13
Isoelectric point8.50
Molecular weight97044.37
Publications
PubMed=29259619

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16696
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.48|      38|      42|     316|     353|       1
---------------------------------------------------------------------------
  284-  306 (24.68/10.94)	................TDW...VQS.DPVHmVFPSSPTISCSD
  316-  353 (61.16/37.37)	STGSGYMSEKR...ESTDSDSKVEE.DPLY.VQHREVSIKAEE
  357-  398 (46.63/26.85)	SAFAEFLKRKKlesEAMEAIGKVKAfESAY.AREMHLQKEAED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.82|      39|     764|       3|      44|       4
---------------------------------------------------------------------------
    6-   44 (72.82/56.52)	DSPIIIPTC...VTRTRTRTDSIIPSMEVLRPPPQHRPTHDP
  650-  691 (65.00/40.01)	DSELSSKICdfgICRLVTEDTLYLPSFHRSTAPKGSFPYADP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.61|      38|      46|     410|     447|       6
---------------------------------------------------------------------------
  410-  447 (61.47/34.26)	LKQEKAFVTQELHRTMRNVALLNSRAQEANRRRDEATG
  459-  496 (66.14/37.34)	LQQEKQRIRRQKVEAVRWLERWRSRGQAGAANYDGFIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16696 with Med32 domain of Kingdom Viridiplantae
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