<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16691

Description Uncharacterized protein
SequenceMNNNNNSSNTPNPNANTNNKDSEEDLAAQPVDTVIKPDKSDTLSSAAAEEEASAKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSSPRALLIANFYGRVTIWTQPAHGPANLARDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPSNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQSAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQLSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWTLKLSSKSAGVHLKTDWENDGCRRMIDNKGAKLCFFNKKVQRLGAFRLSKEWLSEEGTEDELDARNTLASLQSDEAMPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLIASDVTTNKSSDLTYRSRFLLHDFADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWNATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTKFHSYATDFSAISTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSIDFHLNLIATKLGVQRITGITVFDKIEKITYDSLPDLEVDFCGSGLISWLVLPVKFAETELTPFGFEEFW
Length1784
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.193
Instability index40.32
Isoelectric point5.75
Molecular weight194533.67
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16691
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.61|      33|      85|     520|     552|       1
---------------------------------------------------------------------------
  520-  552 (58.58/37.47)	SAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPS
  606-  638 (59.03/37.82)	SSTSCCSASVWHDTNKDRTILKIIRVLPPAVPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.64|      16|      18|     746|     761|       2
---------------------------------------------------------------------------
  746-  761 (27.67/15.61)	GIESALINPSALVPDP
  766-  781 (27.97/15.86)	GETLSGIDPEAMAVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.70|      10|     563|     657|     672|       3
---------------------------------------------------------------------------
  657-  672 (17.26/20.24)	WWsllvnVDWWdAVGC
 1232- 1241 (26.44/12.01)	WW.....ISRW.AFGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.35|      14|      15|     790|     803|       4
---------------------------------------------------------------------------
  790-  803 (24.54/16.08)	YVDAVLDLASHFIT
  808-  821 (25.81/17.31)	YASFCRTLASHAVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.17|      34|     562|     309|     342|       5
---------------------------------------------------------------------------
  309-  342 (61.84/34.17)	TDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQA
  874-  907 (62.33/34.50)	TNDGVSNPTSNPISGPSSFMPISINTGTFPGTPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.49|      26|     562|     474|     511|       6
---------------------------------------------------------------------------
  474-  511 (35.23/43.66)	SSVQpVVLHQIFGNptssfggqapmQTVWVSKVDTSI.P
 1049- 1075 (43.26/22.65)	SNIQ.VRLHYIDGN...........YTVLPEVVEASLgP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.05|      14|      15|     833|     846|       8
---------------------------------------------------------------------------
  833-  846 (24.35/14.99)	SPTQSSATPAASQA
  849-  862 (24.70/15.33)	SGTTSSTGSTQMQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.18|      60|     368|    1338|    1400|      12
---------------------------------------------------------------------------
 1338- 1400 (93.66/79.22)	PTDLFiGE.DiFDDPIAASNLPPLIASDVTT.NKSSDLTYRSRFLLH.DFADSiGLSGLLVLPQAF
 1708- 1770 (94.52/65.72)	PVEAF.GSiD.FHLNLIATKLGVQRITGITVfDKIEKITYDSLPDLEvDFCGS.GLISWLVLPVKF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.70|      14|      15|     172|     186|      13
---------------------------------------------------------------------------
  172-  186 (23.57/18.42)	ANFYGRVTIWtQPAH
  189-  202 (27.13/16.16)	ANLARDASCW.QREH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16691 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGSNRNMVASPTQSSATPAASQAGQSGTTSSTGS
2) MNNNNNSSNTPNPNANTNNKDSEEDLAAQPVDTVIKPDKSDTLSSAAAEEEASAKSDDPMD
823
1
857
61










Molecular Recognition Features






MoRF SequenceStartStop




NANANA