<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16688

Description Uncharacterized protein
SequenceMDMKFQTPTQPQPQPQQQQQQQQESQALANPNASPDQPPQSTAEAPPKQVALALERLAQAGRLIADVRLGADRLLEALFVAAQPHQSNKPLHLFIKEDAAMRQHLQDLRSIGRQLEETGVLNEPLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSYCKTLSDVLMRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEWSPSASVLPYTYLASFGFVTRQARVCAYSLALDQTRFQCWCCGLFFEEAITYMQEVLLFTTYLDTSRSMLVQRYNFFLGSGLKHLFIFFCKCGRLLAMDKRLALLLPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDAQ
Length473
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.09
Grand average of hydropathy-0.281
Instability index54.75
Isoelectric point7.19
Molecular weight53178.07
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16688
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.04|      10|      17|      15|      24|       1
---------------------------------------------------------------------------
   15-   24 (18.95/ 9.41)	PQQQQQQQQE
   35-   44 (19.09/ 9.53)	PDQPPQSTAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.91|      20|     255|     162|     182|       2
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  162-  182 (31.50/23.38)	AVDRtRLA..LKAFTDQKKRFFP
  419-  440 (34.41/20.79)	AMDK.RLAllLPPVSRPYRHFFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.29|      25|      27|     261|     287|       4
---------------------------------------------------------------------------
  261-  287 (37.99/34.30)	ELLKEHNFHSSSKLRPGlqNTVAADKV
  291-  315 (43.30/31.74)	ELLFPSIFRAIVSLHPV..GTIEPDAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16688 with Med27 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDMKFQTPTQPQPQPQQQQQQQQESQALANPNASPDQPPQSTAEAPPKQVAL
1
52










Molecular Recognition Features






MoRF SequenceStartStop




1) MDMKFQT
1
7