<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16686

Description Uncharacterized protein
SequenceMDMKFQTPTQPQPQPQQQQQQQQESQALANPNASPDQPPQSTAEAPPKQVALALERLAQAGRLIADVRLGADRLLEALFVAAQPHQSNKPLHLFIKEDAAMRQHLQDLRSIGRQLEETGVLNEPLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSYCKTLSDVLMRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEVILFLANVLAISRISIFK
Length340
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.384
Instability index57.80
Isoelectric point7.16
Molecular weight37927.84
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16686
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.90|      20|      25|       8|      28|       1
---------------------------------------------------------------------------
    8-   28 (33.77/19.61)	PTQPqPQPQQQQQQQQESQAL
   35-   54 (36.13/17.06)	PDQP.PQSTAEAPPKQVALAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.53|      22|      46|     268|     289|       2
---------------------------------------------------------------------------
  268-  289 (35.72/23.34)	FHSSSKLRPGLQNTVAADKVSV
  298-  315 (22.91/12.55)	FRAIVSLHPV..GTIEPDAV..
  317-  338 (31.90/20.13)	FFSPDEVILFLANVLAISRISI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.35|      34|      41|      66|     100|       3
---------------------------------------------------------------------------
   66-  100 (54.76/32.54)	DVRlGADRLLEALFVAAQP..HQSNK.PLHL.FIKEDAA
  107-  144 (47.59/24.28)	DLR.SIGRQLEETGVLNEPlrSRSNSwGLHMpLVCPDGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16686 with Med27 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDMKFQTPTQPQPQPQQQQQQQQESQALANPNASPDQPPQSTAEAPPKQVAL
1
52










Molecular Recognition Features






MoRF SequenceStartStop




1) MDMKFQTP
1
8