<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16684

Description Uncharacterized protein
SequenceMANQSKEMMEEESCLLSAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESVDACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGSLDQQSMEIDSIGNFSVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSLRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQANIQLSTLQGSKTSGSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAKAASFISVSKNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVSEVKFSYIDVTDYLDLLFMQDARNSVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWKFYRSPHELCLSGGTLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTVSDDPIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKMTKTGASSSNSSTPPSGSASESPACIGEDAYQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSDVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREAAAKWASSDLPRLKSSQASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVKPETLRKLASGLRGWHECELALSLLERGGIGSIPSVMELLHVIN
Length1354
PositionTail
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy0.169
Instability index51.57
Isoelectric point6.63
Molecular weight148303.70
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16684
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     228.22|      73|      97|    1144|    1221|       1
---------------------------------------------------------------------------
 1144- 1221 (105.53/75.17)	GLVAEFarEA.AAKWASSDLPRLKSSQasLSLaTSKARE.VASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGK
 1243- 1317 (122.69/72.02)	GLIWGF..EAkMPSWAVSRRRYLIGTH..FEY.LSRALEgNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVKPETLRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.94|      20|      97|      49|      70|       2
---------------------------------------------------------------------------
   49-   70 (31.76/24.68)	CL...KSGSGSVVELGEVLVsyLCF
  147-  169 (32.18/17.93)	CLqlsRTYNVRVVEFGHALV..LSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.95|      23|      46|     978|    1000|       4
---------------------------------------------------------------------------
  978- 1000 (41.44/24.17)	ILAAVGVSVPCCSAGTSPLTLPL
 1021- 1043 (46.50/28.10)	IHAVIGPALENCAAGCSWPCIPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.50|      33|     135|     699|     733|       6
---------------------------------------------------------------------------
  699-  733 (50.13/39.03)	NSVPDVVASLMPLceVFGSLVPTSSSKSSTGDEPS
  838-  870 (56.37/36.38)	NPVHQVANKILSM..IYSKMTKTGASSSNSSTPPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.72|      25|     570|      93|     121|      12
---------------------------------------------------------------------------
   93-  121 (34.99/35.46)	IHILSL..LTSRViphRRSQPQAFRlYLELL
  666-  692 (38.73/23.97)	VHILSLhgLVSEV...KFSYIDVTD.YLDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.17|      14|      75|     881|     894|      13
---------------------------------------------------------------------------
  881-  894 (29.43/17.94)	GED.AYQRPMLPAWE
  958-  972 (23.74/12.98)	GTDwPSPAPMLPSIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.05|      27|     248|     379|     405|      18
---------------------------------------------------------------------------
  379-  405 (48.18/28.43)	RLVQRERDPP.....EGPLPHLEARLGILLSI
  625-  656 (43.87/25.23)	RFVVKLLSPPippgyTGPRSHLVDHMPMLTAI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16684 with Med33 domain of Kingdom Viridiplantae
Unable to open file!