<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16683

Description Uncharacterized protein
SequenceMDPEGKNFGRGPRELTGAVDLISHYKLLPHHDFFCKRSLPLSISDTHYLHNVVGDTEIRKGEGMQLDQLIQNTSRDTSARIQPFDLDVLREAFQLRETSPVDLPPAEKGVPTLAGKSKSESKDKERKHKKHKDKDKEKDREHKKHKHRHKDRSKDKDKDKDKKKDKSGHHDSSADPSKKHHEKKRKHDGDEDLNDIHRQKKSKHKSSKIDEVGAIKVAG
Length219
PositionHead
OrganismCitrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.03
Grand average of hydropathy-1.521
Instability index36.85
Isoelectric point9.52
Molecular weight25191.97
Publications
PubMed=29259619

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP16683
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.71|      19|      19|     122|     140|       1
---------------------------------------------------------------------------
  122-  140 (34.31/10.72)	KDKERKHKK..HKDKDKEKDR
  158-  178 (26.40/ 6.76)	KDKDKKKDKsgHHDSSADPSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.39|      18|      18|      69|      86|       3
---------------------------------------------------------------------------
   49-   66 (17.79/10.78)	.LHNVV.GDTEIRKgEGMQL
   69-   86 (31.00/23.64)	LIQNTS.RDTSARI.QPFDL
   89-  103 (18.61/11.58)	LREAFQlRETS.....PVDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16683 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VVGDTEIRKGEGMQLDQLIQNTSRDTSARIQPFDLDVLREAFQLRETSPVDLPPAEKGVPTLAGKSKSESKDKERKHKKHKDKDKEKDREHKKHKHRHKDRSKDKDKDKDKKKDKSGHHDSSADPSKKHHEKKRKHDGDEDLNDIHRQKKSKHKSSKIDEVGAIKVAG
52
219










Molecular Recognition Features






MoRF SequenceStartStop




1) ADPSKKHHEKKRKHDGDEDLNDIHRQKKSKHKSSKIDEVGAIKVA
2) KDKERKHKKHKDKDKEKDREHKKHKHRHKDRSKDKDKDKDKKKDKSGHHDS
174
122
218
172